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environment.yaml
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environment.yaml
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name: icat
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- appdirs=1.4.3=py_1
- asn1crypto=0.24.0=py37_1003
- attrs=19.1.0=py_0
- backcall=0.1.0=py_0
- blas=1.0=mkl
- blosc=1.16.3=he1b5a44_1
- bzip2=1.0.8=h516909a_0
- ca-certificates=2019.6.16=hecc5488_0
- cairo=1.16.0=h18b612c_1001
- certifi=2019.6.16=py37_1
- cffi=1.12.3=py37h8022711_0
- chardet=3.0.4=py37_1003
- configargparse=0.13.0=py_1
- cryptography=2.7=py37h72c5cf5_0
- cycler=0.10.0=py_1
- datrie=0.7.1=py37h14c3975_0
- decorator=4.4.0=py_0
- docutils=0.14=py37_1001
- fontconfig=2.13.1=he4413a7_1000
- freetype=2.10.0=he983fc9_0
- gettext=0.19.8.1=hc5be6a0_1002
- gitdb2=2.0.5=py_0
- gitpython=2.1.11=py_0
- glib=2.58.3=h6f030ca_1002
- gmp=6.1.2=hf484d3e_1000
- hdf5=1.10.4=nompi_h3c11f04_1106
- icu=58.2=hf484d3e_1000
- idna=2.8=py37_1000
- igraph=0.7.1=h2166141_1005
- intel-openmp=2019.4=243
- ipython=7.6.1=py37h5ca1d4c_0
- ipython_genutils=0.2.0=py_1
- jedi=0.14.1=py37_0
- joblib=0.13.2=py_0
- jsonschema=3.0.1=py37_0
- kiwisolver=1.1.0=py37hc9558a2_0
- libblas=3.8.0=5_h6e990d7_netlib
- libcblas=3.8.0=5_h6e990d7_netlib
- libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=5_h6e990d7_netlib
- libpng=1.6.37=hed695b0_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_1
- llvmlite=0.28.0=py37hdbcaa40_0
- louvain=0.6.1=py37hf484d3e_2
- lzo=2.10=h14c3975_1000
- matplotlib-base=3.1.1=py37hfd891ef_0
- mkl=2018.0.3=1
- mock=3.0.5=py37_0
- ncurses=6.1=hf484d3e_1002
- networkx=2.3=py_0
- numba=0.43.1=py37hf2d7682_0
- numexpr=2.6.9=py37h637b7d7_1000
- numpy=1.16.3=py37he5ce36f_0
- numpy-base=1.15.0=py37h1793315_0
- openssl=1.1.1c=h516909a_0
- pandas=0.24.2=py37hb3f55d8_0
- parso=0.5.1=py_0
- patsy=0.5.1=py_0
- pcre=8.41=hf484d3e_1003
- pexpect=4.7.0=py37_0
- pickleshare=0.7.5=py37_1000
- pip=19.1.1=py37_0
- pixman=0.38.0=h516909a_1003
- pomegranate=0.11.0=py37h9de70de_0
- prompt_toolkit=2.0.9=py_0
- psutil=5.6.3=py37h516909a_0
- pthread-stubs=0.4=h14c3975_1001
- ptyprocess=0.6.0=py_1001
- pycairo=1.18.1=py37h438ddbb_0
- pycparser=2.19=py37_1
- pygments=2.4.2=py_0
- pyopenssl=19.0.0=py37_0
- pyparsing=2.4.0=py_0
- pyrsistent=0.15.3=py37h516909a_0
- pysocks=1.7.0=py37_0
- pytables=3.5.1=py37h442f067_1
- python=3.7.3=h33d41f4_1
- python-dateutil=2.8.0=py_0
- python-igraph=0.7.1.post7=py37h516909a_0
- pytz=2019.1=py_0
- pyyaml=5.1.1=py37h516909a_0
- ratelimiter=1.2.0=py37_1000
- readline=8.0=hf8c457e_0
- requests=2.22.0=py37_1
- scikit-learn=0.21.1=py37h627018c_0
- scipy=1.2.1=py37h09a28d5_1
- seaborn=0.9.0=py_1
- setuptools=41.0.1=py37_0
- six=1.12.0=py37_1000
- smmap2=2.0.5=py_0
- snakemake-minimal=5.4.5=py_0
- sqlite=3.29.0=hcee41ef_0
- statsmodels=0.9.0=py37h3010b51_1000
- tk=8.6.9=hed695b0_1002
- tornado=6.0.3=py37h516909a_0
- traitlets=4.3.2=py37_1000
- urllib3=1.25.3=py37_0
- wcwidth=0.1.7=py_1
- wheel=0.33.4=py37_0
- wrapt=1.11.2=py37h516909a_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.8=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- yaml=0.1.7=h14c3975_1001
- zlib=1.2.11=h516909a_1005
- pip:
- anndata==0.6.19
- colorcet==2.0.1
- h5py==2.9.0
- natsort==6.0.0
- param==1.9.1
- pyct==0.4.6
- scanpy==1.4.3
- sortedcontainers==2.1.0
- tqdm==4.32.1
- umap-learn==0.3.8
prefix: /home/dakota/miniconda3/envs/icat