From 199ab7cc7d6fa1c8cf899868572d031a83a05d55 Mon Sep 17 00:00:00 2001 From: Vyassa Baratham Date: Thu, 29 Jul 2021 13:22:57 -0700 Subject: [PATCH] rename directories --- analysis/{mars => io_tools}/io/common.py | 0 analysis/{mars => io_tools}/io/nsenwb.py | 0 analysis/{mars => io_tools}/preprocess.py | 0 analysis/{mars => io_tools}/preprocess_100um.sh | 0 analysis/{mars => io_tools}/preprocess_layer_ei.py | 0 analysis/{mars => io_tools}/preprocess_layers.sh | 0 analysis/{mars => io_tools}/preprocess_slices.py | 0 .../signal_processing/__init__.py | 0 .../signal_processing/bandpass.py | 0 .../signal_processing/common_referencing.py | 0 .../{mars => io_tools}/signal_processing/fft.py | 0 .../signal_processing/hilbert_transform.py | 0 .../signal_processing/linenoise_notch.py | 0 .../signal_processing/resample.py | 0 .../{mars => io_tools}/signal_processing/smooth.py | 0 analysis/{mars => io_tools}/utils/bands.py | 0 analysis/{mars => io_tools}/wn/wn_tokenize.py | 0 .../CONTRIBUTING.md | 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b/brain-modeling-tooolkit/bmtk/utils/sonata/column_property.py similarity index 100% rename from bmtk-vb/bmtk/utils/sonata/column_property.py rename to brain-modeling-tooolkit/bmtk/utils/sonata/column_property.py diff --git a/bmtk-vb/bmtk/utils/sonata/column_property.pyc b/brain-modeling-tooolkit/bmtk/utils/sonata/column_property.pyc similarity index 100% rename from bmtk-vb/bmtk/utils/sonata/column_property.pyc rename to brain-modeling-tooolkit/bmtk/utils/sonata/column_property.pyc diff --git a/bmtk-vb/bmtk/utils/sonata/config.py b/brain-modeling-tooolkit/bmtk/utils/sonata/config.py similarity index 100% rename from bmtk-vb/bmtk/utils/sonata/config.py rename to brain-modeling-tooolkit/bmtk/utils/sonata/config.py diff --git a/bmtk-vb/bmtk/utils/sonata/edge.py b/brain-modeling-tooolkit/bmtk/utils/sonata/edge.py similarity index 100% rename from bmtk-vb/bmtk/utils/sonata/edge.py rename to brain-modeling-tooolkit/bmtk/utils/sonata/edge.py diff --git a/bmtk-vb/bmtk/utils/sonata/edge.pyc 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from bmtk-vb/bmtk/utils/sonata/types_table.pyc rename to brain-modeling-tooolkit/bmtk/utils/sonata/types_table.pyc diff --git a/bmtk-vb/bmtk/utils/sonata/utils.py b/brain-modeling-tooolkit/bmtk/utils/sonata/utils.py similarity index 100% rename from bmtk-vb/bmtk/utils/sonata/utils.py rename to brain-modeling-tooolkit/bmtk/utils/sonata/utils.py diff --git a/bmtk-vb/bmtk/utils/sonata/utils.pyc b/brain-modeling-tooolkit/bmtk/utils/sonata/utils.pyc similarity index 100% rename from bmtk-vb/bmtk/utils/sonata/utils.pyc rename to brain-modeling-tooolkit/bmtk/utils/sonata/utils.pyc diff --git a/bmtk-vb/bmtk/utils/spike_trains/__init__.py b/brain-modeling-tooolkit/bmtk/utils/spike_trains/__init__.py similarity index 100% rename from bmtk-vb/bmtk/utils/spike_trains/__init__.py rename to brain-modeling-tooolkit/bmtk/utils/spike_trains/__init__.py diff --git a/bmtk-vb/bmtk/utils/spike_trains/spikes_csv.py b/brain-modeling-tooolkit/bmtk/utils/spike_trains/spikes_csv.py similarity index 100% rename from bmtk-vb/bmtk/utils/spike_trains/spikes_csv.py rename to brain-modeling-tooolkit/bmtk/utils/spike_trains/spikes_csv.py diff --git a/bmtk-vb/bmtk/utils/spike_trains/spikes_file.py b/brain-modeling-tooolkit/bmtk/utils/spike_trains/spikes_file.py similarity index 100% rename from bmtk-vb/bmtk/utils/spike_trains/spikes_file.py rename to brain-modeling-tooolkit/bmtk/utils/spike_trains/spikes_file.py diff --git a/bmtk-vb/build/lib/bmtk/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/cell_vars.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/cell_vars.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/cell_vars.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/cell_vars.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/firing_rates.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/firing_rates.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/firing_rates.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/firing_rates.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/io_tools.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/io_tools.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/io_tools.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/io_tools.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/spike_trains.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/spike_trains.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/spike_trains.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/spike_trains.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/spikes_analyzer.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/spikes_analyzer.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/spikes_analyzer.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/spikes_analyzer.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/spikes_loader.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/spikes_loader.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/spikes_loader.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/spikes_loader.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/utils.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/utils.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/utils.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/utils.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/visualization/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/visualization/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/visualization/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/visualization/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/visualization/rasters.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/visualization/rasters.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/visualization/rasters.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/visualization/rasters.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/visualization/spikes.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/visualization/spikes.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/visualization/spikes.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/visualization/spikes.py diff --git a/bmtk-vb/build/lib/bmtk/analyzer/visualization/widgets.py b/brain-modeling-tooolkit/build/lib/bmtk/analyzer/visualization/widgets.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/analyzer/visualization/widgets.py rename to brain-modeling-tooolkit/build/lib/bmtk/analyzer/visualization/widgets.py diff --git a/bmtk-vb/build/lib/bmtk/builder/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/builder/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/builder/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/builder/aux/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/aux/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/builder/aux/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/builder/aux/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/builder/aux/edge_connectors.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/aux/edge_connectors.py similarity index 100% rename from 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brain-modeling-tooolkit/build/lib/bmtk/builder/bionet/swc_reader.py diff --git a/bmtk-vb/build/lib/bmtk/builder/connection_map.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/connection_map.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/builder/connection_map.py rename to brain-modeling-tooolkit/build/lib/bmtk/builder/connection_map.py diff --git a/bmtk-vb/build/lib/bmtk/builder/connector.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/connector.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/builder/connector.py rename to brain-modeling-tooolkit/build/lib/bmtk/builder/connector.py diff --git a/bmtk-vb/build/lib/bmtk/builder/edge.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/edge.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/builder/edge.py rename to brain-modeling-tooolkit/build/lib/bmtk/builder/edge.py diff --git a/bmtk-vb/build/lib/bmtk/builder/formats/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/formats/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/builder/formats/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/builder/formats/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/builder/formats/hdf5_format.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/formats/hdf5_format.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/builder/formats/hdf5_format.py rename to brain-modeling-tooolkit/build/lib/bmtk/builder/formats/hdf5_format.py diff --git a/bmtk-vb/build/lib/bmtk/builder/formats/iformats.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/formats/iformats.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/builder/formats/iformats.py rename to brain-modeling-tooolkit/build/lib/bmtk/builder/formats/iformats.py diff --git a/bmtk-vb/build/lib/bmtk/builder/functor_cache.py b/brain-modeling-tooolkit/build/lib/bmtk/builder/functor_cache.py similarity index 100% rename from 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--git a/bmtk-vb/build/lib/bmtk/simulator/core/simulator.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/core/simulator.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/core/simulator.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/core/simulator.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/core/simulator_network.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/core/simulator_network.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/core/simulator_network.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/core/simulator_network.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/core/sonata_reader/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/core/sonata_reader/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/core/sonata_reader/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/core/sonata_reader/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/core/sonata_reader/edge_adaptor.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/core/sonata_reader/edge_adaptor.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/core/sonata_reader/edge_adaptor.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/core/sonata_reader/edge_adaptor.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/core/sonata_reader/network_reader.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/core/sonata_reader/network_reader.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/core/sonata_reader/network_reader.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/core/sonata_reader/network_reader.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/core/sonata_reader/node_adaptor.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/core/sonata_reader/node_adaptor.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/core/sonata_reader/node_adaptor.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/core/sonata_reader/node_adaptor.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/cell.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/cell.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/cell.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/cell.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/cell_models.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/cell_models.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/cell_models.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/cell_models.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/config.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/config.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/config.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/config.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/default_setters/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/default_setters/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/default_setters/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/default_setters/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/default_setters/cell_loaders.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/default_setters/cell_loaders.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/default_setters/cell_loaders.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/default_setters/cell_loaders.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/filternetwork.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/filternetwork.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/filternetwork.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/filternetwork.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/filters.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/filters.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/filters.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/filters.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/filtersimulator.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/filtersimulator.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/filtersimulator.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/filtersimulator.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/io_tools.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/io_tools.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/io_tools.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/io_tools.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/cellmodel.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/cellmodel.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/cellmodel.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/cellmodel.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/cursor.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/cursor.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/cursor.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/cursor.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/fitfuns.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/fitfuns.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/fitfuns.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/fitfuns.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/kernel.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/kernel.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/kernel.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/kernel.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/lgnmodel1.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/lgnmodel1.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/lgnmodel1.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/lgnmodel1.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/linearfilter.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/linearfilter.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/linearfilter.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/linearfilter.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/lnunit.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/lnunit.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/lnunit.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/lnunit.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/make_cell_list.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/make_cell_list.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/make_cell_list.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/make_cell_list.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/movie.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/movie.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/movie.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/movie.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/poissongeneration.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/poissongeneration.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/poissongeneration.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/poissongeneration.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/singleunitcell.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/singleunitcell.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/singleunitcell.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/singleunitcell.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/spatialfilter.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/spatialfilter.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/spatialfilter.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/spatialfilter.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/temporalfilter.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/temporalfilter.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/temporalfilter.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/temporalfilter.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/transferfunction.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/transferfunction.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/transferfunction.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/transferfunction.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/util_fns.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/util_fns.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/util_fns.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/util_fns.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/utilities.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/utilities.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/lgnmodel/utilities.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/lgnmodel/utilities.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/modules/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/modules/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/modules/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/modules/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/modules/base.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/modules/base.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/modules/base.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/modules/base.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/modules/create_spikes.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/modules/create_spikes.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/modules/create_spikes.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/modules/create_spikes.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/modules/record_rates.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/modules/record_rates.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/modules/record_rates.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/modules/record_rates.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/pyfunction_cache.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/pyfunction_cache.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/pyfunction_cache.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/pyfunction_cache.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/transfer_functions.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/transfer_functions.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/transfer_functions.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/transfer_functions.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/filternet/utils.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/utils.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/filternet/utils.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/filternet/utils.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/Image_Library.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/Image_Library.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/Image_Library.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/Image_Library.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/Image_Library_Supervised.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/Image_Library_Supervised.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/Image_Library_Supervised.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/Image_Library_Supervised.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/analysis/LocallySparseNoise.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/analysis/LocallySparseNoise.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/analysis/LocallySparseNoise.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/analysis/LocallySparseNoise.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/analysis/StaticGratings.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/analysis/StaticGratings.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/analysis/StaticGratings.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/analysis/StaticGratings.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/analysis/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/analysis/__init__.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/analysis/__init__.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/analysis/__init__.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/C_Layer.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/C_Layer.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/C_Layer.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/C_Layer.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/Readout_Layer.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/Readout_Layer.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/Readout_Layer.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/Readout_Layer.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/S1_Layer.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/S1_Layer.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/S1_Layer.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/S1_Layer.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/S_Layer.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/S_Layer.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/S_Layer.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/S_Layer.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/Sb_Layer.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/Sb_Layer.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/Sb_Layer.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/Sb_Layer.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/ViewTunedLayer.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/ViewTunedLayer.py similarity index 100% rename from bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/ViewTunedLayer.py rename to brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/ViewTunedLayer.py diff --git a/bmtk-vb/build/lib/bmtk/simulator/mintnet/hmax/__init__.py b/brain-modeling-tooolkit/build/lib/bmtk/simulator/mintnet/hmax/__init__.py similarity index 100% rename from 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