diff --git a/html/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html b/html/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html index befdfc4ac7..5f692de77a 100644 --- a/html/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html +++ b/html/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html @@ -1311,7 +1311,7 @@

-

Definition at line 1142 of file codegen_cpp_visitor.cpp.

+

Definition at line 1144 of file codegen_cpp_visitor.cpp.

@@ -5482,7 +5482,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1165 of file codegen_cpp_visitor.cpp.

+

Definition at line 1167 of file codegen_cpp_visitor.cpp.

diff --git a/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor-members.html b/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor-members.html index f48631ac1d..80c76b12bc 100644 --- a/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor-members.html +++ b/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor-members.html @@ -214,9 +214,11 @@ print_nrn_init(bool skip_init_check=true)nmodl::codegen::CodegenNeuronCppVisitorprotected print_nrn_jacob()nmodl::codegen::CodegenNeuronCppVisitorprotected print_nrn_state() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_prcellstate_macros() constnmodl::codegen::CodegenCppVisitorprotected - print_procedure(const ast::ProcedureBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual - print_sdlists_init(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_point_process_function_definitions()nmodl::codegen::CodegenNeuronCppVisitorprotected + print_prcellstate_macros() constnmodl::codegen::CodegenCppVisitorprotected + print_procedure(const ast::ProcedureBlock &node) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_sdlists_init(bool print_initializers) overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual + print_setdata_functions()nmodl::codegen::CodegenNeuronCppVisitorprotected print_standard_includes() overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual print_statement_block(const ast::StatementBlock &node, bool open_brace=true, bool close_brace=true)nmodl::codegen::CodegenCppVisitorprotected print_v_unused() const overridenmodl::codegen::CodegenNeuronCppVisitorprotectedvirtual diff --git a/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html b/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html index 1ca2bfef94..97ab1cf96a 100644 --- a/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html +++ b/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html @@ -542,6 +542,12 @@ void print_net_event_call (const ast::FunctionCall &node) override  Print call to net_event. More...
  +void print_point_process_function_definitions () + Print POINT_PROCESS related functions Wrap external NEURON functions related to POINT_PROCESS mechanisms. More...
+  +void print_setdata_functions () + Print NEURON functions related to setting global variables of the mechanism. More...
+  void print_function_prototypes () override  Print function and procedures prototype declaration. More...
  @@ -1081,7 +1087,7 @@

Definition at line 605 of file codegen_neuron_cpp_visitor.hpp.

+

Definition at line 619 of file codegen_neuron_cpp_visitor.hpp.

@@ -1143,7 +1149,7 @@

Definition at line 627 of file codegen_neuron_cpp_visitor.hpp.

+

Definition at line 641 of file codegen_neuron_cpp_visitor.hpp.

@@ -1232,7 +1238,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 201 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 289 of file codegen_neuron_cpp_visitor.cpp.

@@ -1265,7 +1271,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 150 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 238 of file codegen_neuron_cpp_visitor.cpp.

@@ -1305,7 +1311,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 156 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 244 of file codegen_neuron_cpp_visitor.cpp.

@@ -1357,7 +1363,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 214 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 302 of file codegen_neuron_cpp_visitor.cpp.

@@ -1407,7 +1413,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 275 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 363 of file codegen_neuron_cpp_visitor.cpp.

@@ -1457,7 +1463,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 265 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 353 of file codegen_neuron_cpp_visitor.cpp.

@@ -1516,7 +1522,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 235 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 323 of file codegen_neuron_cpp_visitor.cpp.

@@ -1549,7 +1555,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 138 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 226 of file codegen_neuron_cpp_visitor.cpp.

@@ -1582,7 +1588,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 144 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 232 of file codegen_neuron_cpp_visitor.cpp.

@@ -1614,7 +1620,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 162 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 250 of file codegen_neuron_cpp_visitor.cpp.

@@ -1646,7 +1652,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 168 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 256 of file codegen_neuron_cpp_visitor.cpp.

@@ -1818,7 +1824,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 346 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 434 of file codegen_neuron_cpp_visitor.cpp.

@@ -1850,7 +1856,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1069 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1283 of file codegen_neuron_cpp_visitor.cpp.

@@ -1882,7 +1888,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1060 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1274 of file codegen_neuron_cpp_visitor.cpp.

@@ -1920,7 +1926,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1031 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1245 of file codegen_neuron_cpp_visitor.cpp.

@@ -1952,7 +1958,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 937 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1147 of file codegen_neuron_cpp_visitor.cpp.

@@ -1991,7 +1997,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 127 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 215 of file codegen_neuron_cpp_visitor.cpp.

@@ -2041,7 +2047,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 108 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 196 of file codegen_neuron_cpp_visitor.cpp.

@@ -2080,7 +2086,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 115 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 203 of file codegen_neuron_cpp_visitor.cpp.

@@ -2109,10 +2115,11 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 100 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 185 of file codegen_neuron_cpp_visitor.cpp.

@@ -2143,7 +2150,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1050 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1264 of file codegen_neuron_cpp_visitor.cpp.

@@ -2191,7 +2198,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 768 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 927 of file codegen_neuron_cpp_visitor.cpp.

@@ -2220,7 +2227,7 @@

Definition at line 975 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1185 of file codegen_neuron_cpp_visitor.cpp.

@@ -2250,10 +2257,11 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 520 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 618 of file codegen_neuron_cpp_visitor.cpp.

@@ -2284,7 +2292,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 963 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1173 of file codegen_neuron_cpp_visitor.cpp.

@@ -2314,7 +2322,7 @@

Definition at line 746 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 905 of file codegen_neuron_cpp_visitor.cpp.

@@ -2343,7 +2351,7 @@

Definition at line 969 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1179 of file codegen_neuron_cpp_visitor.cpp.

@@ -2372,7 +2380,7 @@

Definition at line 569 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 691 of file codegen_neuron_cpp_visitor.cpp.

@@ -2411,7 +2419,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 432 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 520 of file codegen_neuron_cpp_visitor.cpp.

@@ -2449,7 +2457,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 706 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 863 of file codegen_neuron_cpp_visitor.cpp.

@@ -2478,10 +2486,16 @@

_nrn_mechanism_register_data_fields(mech_type, + _nrn_mechanism_field<double>{"var_name"}, /* float var index 0 *&zwj;/ + ... +); +

TODO: More things to add here

Implements nmodl::codegen::CodegenCppVisitor.

-

Definition at line 613 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 735 of file codegen_neuron_cpp_visitor.cpp.

@@ -2511,7 +2525,7 @@

Definition at line 992 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1202 of file codegen_neuron_cpp_visitor.cpp.

@@ -2542,7 +2556,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1021 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1235 of file codegen_neuron_cpp_visitor.cpp.

@@ -2573,7 +2587,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1026 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1240 of file codegen_neuron_cpp_visitor.cpp.

@@ -2604,7 +2618,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 190 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 278 of file codegen_neuron_cpp_visitor.cpp.

@@ -2635,7 +2649,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 196 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 284 of file codegen_neuron_cpp_visitor.cpp.

@@ -2673,7 +2687,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1094 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1309 of file codegen_neuron_cpp_visitor.cpp.

@@ -2711,7 +2725,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1090 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1305 of file codegen_neuron_cpp_visitor.cpp.

@@ -2749,7 +2763,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1086 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1301 of file codegen_neuron_cpp_visitor.cpp.

@@ -2778,7 +2792,7 @@

Definition at line 379 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 467 of file codegen_neuron_cpp_visitor.cpp.

@@ -2807,10 +2821,11 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 818 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 977 of file codegen_neuron_cpp_visitor.cpp.

@@ -2842,7 +2857,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 806 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 965 of file codegen_neuron_cpp_visitor.cpp.

@@ -2875,7 +2890,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 943 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1153 of file codegen_neuron_cpp_visitor.cpp.

@@ -2915,7 +2930,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 919 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1129 of file codegen_neuron_cpp_visitor.cpp.

@@ -2954,7 +2969,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 931 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1141 of file codegen_neuron_cpp_visitor.cpp.

@@ -2987,7 +3002,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 925 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1135 of file codegen_neuron_cpp_visitor.cpp.

@@ -3027,7 +3042,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 913 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1123 of file codegen_neuron_cpp_visitor.cpp.

@@ -3059,7 +3074,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 812 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 971 of file codegen_neuron_cpp_visitor.cpp.

@@ -3095,7 +3110,7 @@

Definition at line 782 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 941 of file codegen_neuron_cpp_visitor.cpp.

@@ -3124,7 +3139,7 @@

Definition at line 794 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 953 of file codegen_neuron_cpp_visitor.cpp.

@@ -3157,7 +3172,36 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 864 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1074 of file codegen_neuron_cpp_visitor.cpp.

+ + + + +

◆ print_point_process_function_definitions()

+ +
+
+ + + + + +
+ + + + + + + +
void nmodl::codegen::CodegenNeuronCppVisitor::print_point_process_function_definitions ()
+
+protected
+
+ +

Print POINT_PROCESS related functions Wrap external NEURON functions related to POINT_PROCESS mechanisms.

+ +

Definition at line 99 of file codegen_neuron_cpp_visitor.cpp.

@@ -3196,7 +3240,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 121 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 209 of file codegen_neuron_cpp_visitor.cpp.

@@ -3231,7 +3275,36 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 390 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 478 of file codegen_neuron_cpp_visitor.cpp.

+ + + + +

◆ print_setdata_functions()

+ +
+
+ + + + + +
+ + + + + + + +
void nmodl::codegen::CodegenNeuronCppVisitor::print_setdata_functions ()
+
+protected
+
+ +

Print NEURON functions related to setting global variables of the mechanism.

+ +

Definition at line 146 of file codegen_neuron_cpp_visitor.cpp.

@@ -3262,7 +3335,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 366 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 454 of file codegen_neuron_cpp_visitor.cpp.

@@ -3293,7 +3366,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1038 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1252 of file codegen_neuron_cpp_visitor.cpp.

@@ -3333,7 +3406,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 174 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 262 of file codegen_neuron_cpp_visitor.cpp.

@@ -3365,7 +3438,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 180 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 268 of file codegen_neuron_cpp_visitor.cpp.

@@ -3428,7 +3501,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1104 of file codegen_neuron_cpp_visitor.cpp.

+

Definition at line 1319 of file codegen_neuron_cpp_visitor.cpp.

diff --git a/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.js b/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.js index d16b39b0ce..620923627b 100644 --- a/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.js +++ b/html/doxygen/classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.js @@ -59,8 +59,10 @@ var classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor = [ "print_nrn_init", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#ad4ac4cce1ce357ab264dde505128f5e5", null ], [ "print_nrn_jacob", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#acc60913cbeb34f75a125224f6a3a79bd", null ], [ "print_nrn_state", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a24c55a8420d179cbbd7bc6968f3c12e3", null ], + [ "print_point_process_function_definitions", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#aba63d80e4b1b15280a92ea120bc6160c", null ], [ "print_procedure", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#ab5ead6dc1ad6f664019b6713d3238622", null ], [ "print_sdlists_init", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a9b04c504442be8eaffd17f52376b265a", null ], + [ "print_setdata_functions", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a89c15974d73972df388dc1133fdfa406", null ], [ "print_standard_includes", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a75551174c0c66124b0096de40ca20cbf", null ], [ "print_v_unused", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#aaea5e3201bfb4a18f919f8e60db23d49", null ], [ "process_verbatim_text", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a13af4fa40fc5b97bfcf91d199fe6a8e2", null ], diff --git a/html/doxygen/codegen__cpp__visitor_8cpp_source.html b/html/doxygen/codegen__cpp__visitor_8cpp_source.html index 7875d9c80f..fbe51c5d07 100644 --- a/html/doxygen/codegen__cpp__visitor_8cpp_source.html +++ b/html/doxygen/codegen__cpp__visitor_8cpp_source.html @@ -1233,38 +1233,40 @@
1137 
1138  update_index_semantics();
1139  rename_function_arguments();
-
1140 }
-
1141 
- -
1143  if (type == BlockType::Initial) {
-
1144  return method_name(naming::NRN_INIT_METHOD);
-
1145  }
-
1146  if (type == BlockType::Constructor) {
-
1147  return method_name(naming::NRN_CONSTRUCTOR_METHOD);
-
1148  }
-
1149  if (type == BlockType::Destructor) {
-
1150  return method_name(naming::NRN_DESTRUCTOR_METHOD);
-
1151  }
-
1152  if (type == BlockType::State) {
-
1153  return method_name(naming::NRN_STATE_METHOD);
-
1154  }
-
1155  if (type == BlockType::Equation) {
-
1156  return method_name(naming::NRN_CUR_METHOD);
-
1157  }
-
1158  if (type == BlockType::Watch) {
-
1159  return method_name(naming::NRN_WATCH_CHECK_METHOD);
-
1160  }
-
1161  throw std::logic_error("compute_method_name not implemented");
-
1162 }
-
1163 
-
1164 
- -
1166  setup(node);
-
1167  print_codegen_routines();
-
1168 }
-
1169 
-
1170 } // namespace codegen
-
1171 } // namespace nmodl
+
1140 
+
1141  info.semantic_variable_count = int_variables_size();
+
1142 }
+
1143 
+ +
1145  if (type == BlockType::Initial) {
+
1146  return method_name(naming::NRN_INIT_METHOD);
+
1147  }
+
1148  if (type == BlockType::Constructor) {
+
1149  return method_name(naming::NRN_CONSTRUCTOR_METHOD);
+
1150  }
+
1151  if (type == BlockType::Destructor) {
+
1152  return method_name(naming::NRN_DESTRUCTOR_METHOD);
+
1153  }
+
1154  if (type == BlockType::State) {
+
1155  return method_name(naming::NRN_STATE_METHOD);
+
1156  }
+
1157  if (type == BlockType::Equation) {
+
1158  return method_name(naming::NRN_CUR_METHOD);
+
1159  }
+
1160  if (type == BlockType::Watch) {
+
1161  return method_name(naming::NRN_WATCH_CHECK_METHOD);
+
1162  }
+
1163  throw std::logic_error("compute_method_name not implemented");
+
1164 }
+
1165 
+
1166 
+ +
1168  setup(node);
+
1169  print_codegen_routines();
+
1170 }
+
1171 
+
1172 } // namespace codegen
+
1173 } // namespace nmodl
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:7061
@@ -1447,11 +1449,11 @@
std::shared_ptr< ElseStatement > get_elses() const noexcept
Getter for member variable IfStatement::elses.
std::shared_ptr< Expression > get_lhs() const noexcept
Getter for member variable BinaryExpression::lhs.
virtual bool is_line_comment() const noexcept
Check if the ast node is an instance of ast::LineComment.
Definition: ast.cpp:284
-
std::string compute_method_name(BlockType type) const
+
std::string compute_method_name(BlockType type) const
static constexpr char AREA_VARIABLE[]
similar to node_area but user can explicitly declare it as area
Represents a name.
Definition: name.hpp:44
virtual bool is_while_statement() const noexcept
Check if the ast node is an instance of ast::WhileStatement.
Definition: ast.cpp:232
-
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
+
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
virtual bool is_else_statement() const noexcept
Check if the ast node is an instance of ast::ElseStatement.
Definition: ast.cpp:238
std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
Getter for member variable FromStatement::statement_block.
Represents top level AST node for whole NMODL input.
Definition: program.hpp:39
diff --git a/html/doxygen/codegen__cpp__visitor_8hpp_source.html b/html/doxygen/codegen__cpp__visitor_8hpp_source.html index 88dfbeee79..0bae7ba652 100644 --- a/html/doxygen/codegen__cpp__visitor_8hpp_source.html +++ b/html/doxygen/codegen__cpp__visitor_8hpp_source.html @@ -1623,10 +1623,10 @@
Visitor for printing C++ code compatible with legacy api of CoreNEURON
virtual void print_namespace_start()=0
Prints the start of the simulator namespace.
std::string instance_struct() const
Name of structure that wraps range variables.
-
std::string compute_method_name(BlockType type) const
+
std::string compute_method_name(BlockType type) const
virtual const char * external_method_arguments() noexcept=0
Arguments for external functions called from generated code.
Represents a name.
Definition: name.hpp:44
-
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
+
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
std::string mod_filename
Name of mod file (without .mod suffix)
virtual std::string get_variable_name(const std::string &name, bool use_instance=true) const =0
Determine variable name in the structure of mechanism properties.
Represents top level AST node for whole NMODL input.
Definition: program.hpp:39
diff --git a/html/doxygen/codegen__info_8cpp_source.html b/html/doxygen/codegen__info_8cpp_source.html index 977298236e..cdeb97ffe4 100644 --- a/html/doxygen/codegen__info_8cpp_source.html +++ b/html/doxygen/codegen__info_8cpp_source.html @@ -207,7 +207,7 @@
bool ion_has_write_variable() const noexcept
if any ion has write variable
-
std::vector< Ion > ions
ions used in the mod file
+
std::vector< Ion > ions
ions used in the mod file
encapsulates code generation backend implementations
Definition: ast_common.hpp:26
Check if variable is used in given block.
Utility functions for visitors implementation.
diff --git a/html/doxygen/codegen__info_8hpp_source.html b/html/doxygen/codegen__info_8hpp_source.html index c096db0b62..a95291de38 100644 --- a/html/doxygen/codegen__info_8hpp_source.html +++ b/html/doxygen/codegen__info_8hpp_source.html @@ -394,256 +394,260 @@
298  /// typically equal to number of primes
299  int num_equations = 0;
300 
-
301  /// True if we have to emit CVODE code
-
302  /// TODO: Figure out when this needs to be true
-
303  bool emit_cvode = false;
-
304 
-
305  /// derivative block
- +
301  /// number of semantic variables
+ +
303 
+
304  /// True if we have to emit CVODE code
+
305  /// TODO: Figure out when this needs to be true
+
306  bool emit_cvode = false;
307 
-
308  /// nrn_state block
- +
308  /// derivative block
+
310 
-
311  /// net receive block for point process
- +
311  /// nrn_state block
+
313 
-
314  /// number of arguments to net_receive block
- +
314  /// net receive block for point process
+
316 
-
317  /// initial block within net receive block
- +
317  /// number of arguments to net_receive block
+
319 
-
320  /// initial block
-
321  const ast::InitialBlock* initial_node = nullptr;
+
320  /// initial block within net receive block
+
322 
-
323  /// constructor block
- +
323  /// initial block
+
324  const ast::InitialBlock* initial_node = nullptr;
325 
-
326  /// destructor block only for point process
- +
326  /// constructor block
+
328 
-
329  /// all procedures defined in the mod file
-
330  std::vector<const ast::ProcedureBlock*> procedures;
+
329  /// destructor block only for point process
+
331 
-
332  /// derivimplicit callbacks need to be emited
-
333  std::vector<const ast::DerivimplicitCallback*> derivimplicit_callbacks;
+
332  /// all procedures defined in the mod file
+
333  std::vector<const ast::ProcedureBlock*> procedures;
334 
-
335  /// all functions defined in the mod file
-
336  std::vector<const ast::FunctionBlock*> functions;
+
335  /// derivimplicit callbacks need to be emited
+
336  std::vector<const ast::DerivimplicitCallback*> derivimplicit_callbacks;
337 
-
338  /// all functions tables defined in the mod file
-
339  std::vector<const ast::FunctionTableBlock*> function_tables;
+
338  /// all functions defined in the mod file
+
339  std::vector<const ast::FunctionBlock*> functions;
340 
-
341  /// all factors defined in the mod file
-
342  std::vector<const ast::FactorDef*> factor_definitions;
+
341  /// all functions tables defined in the mod file
+
342  std::vector<const ast::FunctionTableBlock*> function_tables;
343 
-
344  /// ions used in the mod file
-
345  std::vector<Ion> ions;
-
346 
-
347  using SymbolType = std::shared_ptr<symtab::Symbol>;
-
348 
-
349  /// range variables which are parameter as well
-
350  std::vector<SymbolType> range_parameter_vars;
+
344  /// all factors defined in the mod file
+
345  std::vector<const ast::FactorDef*> factor_definitions;
+
346 
+
347  /// ions used in the mod file
+
348  std::vector<Ion> ions;
+
349 
+
350  using SymbolType = std::shared_ptr<symtab::Symbol>;
351 
-
352  /// range variables which are assigned variables as well
-
353  std::vector<SymbolType> range_assigned_vars;
+
352  /// range variables which are parameter as well
+
353  std::vector<SymbolType> range_parameter_vars;
354 
-
355  /// remaining assigned variables
-
356  std::vector<SymbolType> assigned_vars;
+
355  /// range variables which are assigned variables as well
+
356  std::vector<SymbolType> range_assigned_vars;
357 
-
358  /// all state variables
-
359  std::vector<SymbolType> state_vars;
+
358  /// remaining assigned variables
+
359  std::vector<SymbolType> assigned_vars;
360 
-
361  /// state variables excluding such useion read/write variables
-
362  /// that are not ionic currents. In neuron/mod2c these are stored
-
363  /// in the list "rangestate".
-
364  std::vector<SymbolType> range_state_vars;
-
365 
-
366  /// local variables in the global scope
-
367  std::vector<SymbolType> top_local_variables;
+
361  /// all state variables
+
362  std::vector<SymbolType> state_vars;
+
363 
+
364  /// state variables excluding such useion read/write variables
+
365  /// that are not ionic currents. In neuron/mod2c these are stored
+
366  /// in the list "rangestate".
+
367  std::vector<SymbolType> range_state_vars;
368 
-
369  /// pointer or bbcore pointer variables
-
370  std::vector<SymbolType> pointer_variables;
+
369  /// local variables in the global scope
+
370  std::vector<SymbolType> top_local_variables;
371 
-
372  /// RANDOM variables
-
373  std::vector<SymbolType> random_variables;
+
372  /// pointer or bbcore pointer variables
+
373  std::vector<SymbolType> pointer_variables;
374 
-
375  /// index/offset for first pointer variable if exist
- +
375  /// RANDOM variables
+
376  std::vector<SymbolType> random_variables;
377 
-
378  /// index/offset for first RANDOM variable if exist
- +
378  /// index/offset for first pointer variable if exist
+
380 
-
381  /// tqitem index in integer variables
-
382  /// note that if tqitem doesn't exist then the default value should be 0
-
383  int tqitem_index = 0;
-
384 
-
385  /// updated dt to use with steadystate solver (in initial block)
-
386  /// empty string means no change in dt
-
387  std::string changed_dt;
-
388 
-
389  /// global variables
-
390  std::vector<SymbolType> global_variables;
+
381  /// index/offset for first RANDOM variable if exist
+ +
383 
+
384  /// tqitem index in integer variables
+
385  /// note that if tqitem doesn't exist then the default value should be 0
+
386  int tqitem_index = 0;
+
387 
+
388  /// updated dt to use with steadystate solver (in initial block)
+
389  /// empty string means no change in dt
+
390  std::string changed_dt;
391 
-
392  /// constant variables
-
393  std::vector<SymbolType> constant_variables;
+
392  /// global variables
+
393  std::vector<SymbolType> global_variables;
394 
-
395  /// thread variables (e.g. global variables promoted to thread)
-
396  std::vector<SymbolType> thread_variables;
+
395  /// constant variables
+
396  std::vector<SymbolType> constant_variables;
397 
-
398  /// new one used in print_ion_types
-
399  std::vector<SymbolType> use_ion_variables;
+
398  /// thread variables (e.g. global variables promoted to thread)
+
399  std::vector<SymbolType> thread_variables;
400 
-
401  /// this is the order in which they appear in derivative block
-
402  /// this is required while printing them in initlist function
-
403  std::vector<SymbolType> prime_variables_by_order;
-
404 
-
405  /// table variables
-
406  std::vector<SymbolType> table_statement_variables;
-
407  std::vector<SymbolType> table_assigned_variables;
-
408 
-
409  /// [Core]NEURON global variables used (e.g. celsius) and their types
-
410  std::vector<std::pair<SymbolType, std::string>> neuron_global_variables;
+
401  /// new one used in print_ion_types
+
402  std::vector<SymbolType> use_ion_variables;
+
403 
+
404  /// this is the order in which they appear in derivative block
+
405  /// this is required while printing them in initlist function
+
406  std::vector<SymbolType> prime_variables_by_order;
+
407 
+
408  /// table variables
+
409  std::vector<SymbolType> table_statement_variables;
+
410  std::vector<SymbolType> table_assigned_variables;
411 
-
412  /// function or procedures with table statement
-
413  std::vector<const ast::Block*> functions_with_table;
+
412  /// [Core]NEURON global variables used (e.g. celsius) and their types
+
413  std::vector<std::pair<SymbolType, std::string>> neuron_global_variables;
414 
-
415  /// represent conductance statements used in mod file
-
416  std::vector<Conductance> conductances;
+
415  /// function or procedures with table statement
+
416  std::vector<const ast::Block*> functions_with_table;
417 
-
418  /// index variable semantic information
-
419  std::vector<IndexSemantics> semantics;
+
418  /// represent conductance statements used in mod file
+
419  std::vector<Conductance> conductances;
420 
-
421  /// non specific and ionic currents
-
422  std::vector<std::string> currents;
+
421  /// index variable semantic information
+
422  std::vector<IndexSemantics> semantics;
423 
-
424  /// all top level global blocks
-
425  std::vector<ast::Node*> top_blocks;
+
424  /// non specific and ionic currents
+
425  std::vector<std::string> currents;
426 
-
427  /// all top level verbatim blocks
-
428  std::vector<ast::Node*> top_verbatim_blocks;
+
427  /// all top level global blocks
+
428  std::vector<ast::Node*> top_blocks;
429 
-
430  /// all watch statements
-
431  std::vector<const ast::WatchStatement*> watch_statements;
+
430  /// all top level verbatim blocks
+
431  std::vector<ast::Node*> top_verbatim_blocks;
432 
-
433  /// all before after blocks
-
434  std::vector<const ast::Block*> before_after_blocks;
+
433  /// all watch statements
+
434  std::vector<const ast::WatchStatement*> watch_statements;
435 
-
436  /// all variables/symbols used in the verbatim block
-
437  std::unordered_set<std::string> variables_in_verbatim;
+
436  /// all before after blocks
+
437  std::vector<const ast::Block*> before_after_blocks;
438 
-
439  /// unique functor names for all the \c EigenNewtonSolverBlock s
-
440  std::unordered_map<const ast::EigenNewtonSolverBlock*, std::string> functor_names;
+
439  /// all variables/symbols used in the verbatim block
+
440  std::unordered_set<std::string> variables_in_verbatim;
441 
-
442  /// true if eigen newton solver is used
- +
442  /// unique functor names for all the \c EigenNewtonSolverBlock s
+
443  std::unordered_map<const ast::EigenNewtonSolverBlock*, std::string> functor_names;
444 
-
445  /// true if eigen linear solver is used
- +
445  /// true if eigen newton solver is used
+
447 
-
448  /// if any ion has write variable
-
449  bool ion_has_write_variable() const noexcept;
+
448  /// true if eigen linear solver is used
+
450 
-
451  /// if given variable is ion write variable
-
452  bool is_ion_write_variable(const std::string& name) const noexcept;
+
451  /// if any ion has write variable
+
452  bool ion_has_write_variable() const noexcept;
453 
-
454  /// if given variable is ion read variable
-
455  bool is_ion_read_variable(const std::string& name) const noexcept;
+
454  /// if given variable is ion write variable
+
455  bool is_ion_write_variable(const std::string& name) const noexcept;
456 
-
457  /// if either read or write variable
-
458  bool is_ion_variable(const std::string& name) const noexcept;
+
457  /// if given variable is ion read variable
+
458  bool is_ion_read_variable(const std::string& name) const noexcept;
459 
-
460  /// if given variable is a current
-
461  bool is_current(const std::string& name) const noexcept;
+
460  /// if either read or write variable
+
461  bool is_ion_variable(const std::string& name) const noexcept;
462 
-
463  /// if given variable is a ionic current
-
464  bool is_ionic_current(const std::string& name) const noexcept;
+
463  /// if given variable is a current
+
464  bool is_current(const std::string& name) const noexcept;
465 
-
466  /// if given variable is a ionic concentration
-
467  bool is_ionic_conc(const std::string& name) const noexcept;
+
466  /// if given variable is a ionic current
+
467  bool is_ionic_current(const std::string& name) const noexcept;
468 
-
469  /// if watch statements are used
-
470  bool is_watch_used() const noexcept {
-
471  return watch_count > 0;
-
472  }
-
473 
-
474  bool emit_table_thread() const noexcept {
-
475  return (table_count > 0 && vectorize == true);
-
476  }
-
477 
-
478  /// if legacy derivimplicit solver from coreneuron to be used
-
479  inline bool derivimplicit_used() const {
-
480  return !derivimplicit_callbacks.empty();
-
481  }
-
482 
-
483  bool function_uses_table(const std::string& name) const noexcept;
-
484 
-
485  /// true if EigenNewtonSolver is used in nrn_state block
- +
469  /// if given variable is a ionic concentration
+
470  bool is_ionic_conc(const std::string& name) const noexcept;
+
471 
+
472  /// if watch statements are used
+
473  bool is_watch_used() const noexcept {
+
474  return watch_count > 0;
+
475  }
+
476 
+
477  bool emit_table_thread() const noexcept {
+
478  return (table_count > 0 && vectorize == true);
+
479  }
+
480 
+
481  /// if legacy derivimplicit solver from coreneuron to be used
+
482  inline bool derivimplicit_used() const {
+
483  return !derivimplicit_callbacks.empty();
+
484  }
+
485 
+
486  bool function_uses_table(const std::string& name) const noexcept;
487 
-
488  /// true if WatchStatement uses voltage v variable
- +
488  /// true if EigenNewtonSolver is used in nrn_state block
+
490 
-
491  /// if we need a call back to wrote_conc in neuron/coreneuron
-
492  bool require_wrote_conc = false;
-
493 };
-
494 
-
495 /** \} */ // end of codegen_backends
-
496 
-
497 } // namespace codegen
-
498 } // namespace nmodl
+
491  /// true if WatchStatement uses voltage v variable
+ +
493 
+
494  /// if we need a call back to wrote_conc in neuron/coreneuron
+
495  bool require_wrote_conc = false;
+
496 };
+
497 
+
498 /** \} */ // end of codegen_backends
+
499 
+
500 } // namespace codegen
+
501 } // namespace nmodl
-
std::vector< const ast::FunctionBlock * > functions
all functions defined in the mod file
+
std::vector< const ast::FunctionBlock * > functions
all functions defined in the mod file
-
bool emit_cvode
True if we have to emit CVODE code TODO: Figure out when this needs to be true.
-
int num_net_receive_parameters
number of arguments to net_receive block
+
bool emit_cvode
True if we have to emit CVODE code TODO: Figure out when this needs to be true.
+
int num_net_receive_parameters
number of arguments to net_receive block
std::string ion
name of the ion
bool ion_has_write_variable() const noexcept
if any ion has write variable
-
int tqitem_index
tqitem index in integer variables note that if tqitem doesn't exist then the default value should be ...
-
std::vector< ast::Node * > top_verbatim_blocks
all top level verbatim blocks
+
int tqitem_index
tqitem index in integer variables note that if tqitem doesn't exist then the default value should be ...
+
std::vector< ast::Node * > top_verbatim_blocks
all top level verbatim blocks
bool for_netcon_used
if for_netcon is used
-
const ast::NetReceiveBlock * net_receive_node
net receive block for point process
-
std::vector< Ion > ions
ions used in the mod file
+
const ast::NetReceiveBlock * net_receive_node
net receive block for point process
+
std::vector< Ion > ions
ions used in the mod file
static std::vector< std::string > get_possible_variables(const std::string &ion_name)
for a given ion, return different variable names/properties like internal/external concentration,...
bool diam_used
if diam is used
bool thread_callback_register
if thread thread call back routines need to register
int watch_count
number of watch expressions
-
std::vector< const ast::DerivimplicitCallback * > derivimplicit_callbacks
derivimplicit callbacks need to be emited
+
std::vector< const ast::DerivimplicitCallback * > derivimplicit_callbacks
derivimplicit callbacks need to be emited
int derivimplicit_list_num
slist/dlist id for derivimplicit block
int thread_data_index
thread_data_index indicates number of threads being allocated.
-
bool derivimplicit_used() const
if legacy derivimplicit solver from coreneuron to be used
-
std::vector< SymbolType > table_statement_variables
table variables
+
bool derivimplicit_used() const
if legacy derivimplicit solver from coreneuron to be used
+
std::vector< SymbolType > table_statement_variables
table variables
-
const ast::InitialBlock * initial_node
initial block
+
const ast::InitialBlock * initial_node
initial block
int num_primes
number of primes (all state variables not necessary to be prime)
-
std::vector< SymbolType > table_assigned_variables
+
std::vector< SymbolType > table_assigned_variables
bool net_send_used
if net_send function is used
bool is_ionic_variable(const std::string &text) const
Is the variable name text related to this ion?
encapsulates code generation backend implementations
Definition: ast_common.hpp:26
Represent ions used in mod file.
Implement classes for representing symbol table at block and file scope.
-
const ast::ConstructorBlock * constructor_node
constructor block
+
const ast::ConstructorBlock * constructor_node
constructor block
int top_local_thread_size
total length of all top local variables
std::string name
name of the ion
bool is_voltage_used_by_watch_statements() const
true if WatchStatement uses voltage v variable
-
std::string changed_dt
updated dt to use with steadystate solver (in initial block) empty string means no change in dt
-
std::vector< SymbolType > constant_variables
constant variables
-
std::unordered_map< const ast::EigenNewtonSolverBlock *, std::string > functor_names
unique functor names for all the EigenNewtonSolverBlock s
+
std::string changed_dt
updated dt to use with steadystate solver (in initial block) empty string means no change in dt
+
std::vector< SymbolType > constant_variables
constant variables
+
std::unordered_map< const ast::EigenNewtonSolverBlock *, std::string > functor_names
unique functor names for all the EigenNewtonSolverBlock s
bool bbcore_pointer_used
if bbcore pointer is used
std::string mod_suffix
name of the suffix
-
std::vector< const ast::ProcedureBlock * > procedures
all procedures defined in the mod file
+
std::vector< const ast::ProcedureBlock * > procedures
all procedures defined in the mod file
Represent information collected from AST for code generation.
-
std::vector< SymbolType > global_variables
global variables
+
std::vector< SymbolType > global_variables
global variables
int table_count
number of table statements
-
int first_pointer_var_index
index/offset for first pointer variable if exist
+
int first_pointer_var_index
index/offset for first pointer variable if exist
bool thread_safe
if mod file is thread safe (always true for coreneuron)
std::vector< std::string > writes
ion variables that are being written
-
std::vector< SymbolType > state_vars
all state variables
-
std::vector< const ast::WatchStatement * > watch_statements
all watch statements
+
std::vector< SymbolType > state_vars
all state variables
+
std::vector< const ast::WatchStatement * > watch_statements
all watch statements
+
int semantic_variable_count
number of semantic variables
int thread_var_data_size
sum of length of thread promoted variables
Represents a INITIAL block in the NMODL.
-
std::vector< IndexSemantics > semantics
index variable semantic information
+
std::vector< IndexSemantics > semantics
index variable semantic information
bool artificial_cell
if mod file is artificial cell
bool area_used
if area is used
bool is_rev_potential(const std::string &text) const
Check if variable name is reveral potential.
@@ -651,35 +655,35 @@
std::string name
name/type of the variable (i.e. semantics)
Represents a BREAKPOINT block in NMODL.
-
std::vector< SymbolType > top_local_variables
local variables in the global scope
+
std::vector< SymbolType > top_local_variables
local variables in the global scope
bool need_style
if style semantic needed
int num_solve_blocks
number of solve blocks in mod file
Represents a DESTRUCTOR block in the NMODL.
-
bool eigen_linear_solver_exist
true if eigen linear solver is used
-
std::vector< SymbolType > thread_variables
thread variables (e.g. global variables promoted to thread)
+
bool eigen_linear_solver_exist
true if eigen linear solver is used
+
std::vector< SymbolType > thread_variables
thread variables (e.g. global variables promoted to thread)
Represents a CONSTRUCTOR block in the NMODL.
-
std::vector< ast::Node * > top_blocks
all top level global blocks
+
std::vector< ast::Node * > top_blocks
all top level global blocks
bool is_ionic_current(const std::string &name) const noexcept
if given variable is a ionic current
-
std::unordered_set< std::string > variables_in_verbatim
all variables/symbols used in the verbatim block
-
bool require_wrote_conc
if we need a call back to wrote_conc in neuron/coreneuron
+
std::unordered_set< std::string > variables_in_verbatim
all variables/symbols used in the verbatim block
+
bool require_wrote_conc
if we need a call back to wrote_conc in neuron/coreneuron
Represent semantic information for index variable.
bool is_intra_cell_conc(const std::string &text) const
Check if variable name is internal cell concentration.
int size
number of elements (typically one)
-
const ast::BreakpointBlock * breakpoint_node
derivative block
-
bool eigen_newton_solver_exist
true if eigen newton solver is used
+
const ast::BreakpointBlock * breakpoint_node
derivative block
+
bool eigen_newton_solver_exist
true if eigen newton solver is used
bool is_extra_cell_conc(const std::string &text) const
Check if variable name is external cell concentration.
-
std::vector< std::string > currents
non specific and ionic currents
-
int first_random_var_index
index/offset for first RANDOM variable if exist
+
std::vector< std::string > currents
non specific and ionic currents
+
int first_random_var_index
index/offset for first RANDOM variable if exist
bool point_process
if mod file is point process
-
const ast::NrnStateBlock * nrn_state_block
nrn_state block
+
const ast::NrnStateBlock * nrn_state_block
nrn_state block
bool vectorize
true if mod file is vectorizable (which should be always true for coreneuron) But there are some bloc...
std::string variable
ion variable like intra/extra concentration
std::string mod_file
name of mod file
-
std::vector< SymbolType > range_assigned_vars
range variables which are assigned variables as well
-
std::vector< const ast::Block * > functions_with_table
function or procedures with table statement
+
std::vector< SymbolType > range_assigned_vars
range variables which are assigned variables as well
+
std::vector< const ast::Block * > functions_with_table
function or procedures with table statement
bool is_ionic_conc(const std::string &text) const
check if it is either internal or external concentration
bool is_ion_write_variable(const std::string &name) const noexcept
if given variable is ion write variable
-
std::vector< const ast::FunctionTableBlock * > function_tables
all functions tables defined in the mod file
+
std::vector< const ast::FunctionTableBlock * > function_tables
all functions tables defined in the mod file
int primes_size
sum of length of all prime variables
Auto generated AST classes declaration.
bool function_uses_table(const std::string &name) const noexcept
@@ -687,37 +691,37 @@
int variable_index(const std::string &var_name) const
Variable index in the ion mechanism.
int derivimplicit_var_thread_id
thread id for derivimplicit variables
Represents the coreneuron nrn_state callback function.
-
std::vector< Conductance > conductances
represent conductance statements used in mod file
+
std::vector< Conductance > conductances
represent conductance statements used in mod file
int index
start position in the int array
-
bool emit_table_thread() const noexcept
-
std::vector< std::pair< SymbolType, std::string > > neuron_global_variables
[Core]NEURON global variables used (e.g. celsius) and their types
+
bool emit_table_thread() const noexcept
+
std::vector< std::pair< SymbolType, std::string > > neuron_global_variables
[Core]NEURON global variables used (e.g. celsius) and their types
bool electrode_current
if electrode current specified
bool is_current_derivative(const std::string &text) const
std::vector< std::string > implicit_reads
ion variables that are being implicitly read
-
const ast::InitialBlock * net_receive_initial_node
initial block within net receive block
+
const ast::InitialBlock * net_receive_initial_node
initial block within net receive block
bool is_ion_read_variable(const std::string &name) const noexcept
if given variable is ion read variable
-
std::vector< const ast::FactorDef * > factor_definitions
all factors defined in the mod file
-
std::vector< SymbolType > prime_variables_by_order
this is the order in which they appear in derivative block this is required while printing them in in...
-
std::vector< SymbolType > pointer_variables
pointer or bbcore pointer variables
-
bool is_watch_used() const noexcept
if watch statements are used
+
std::vector< const ast::FactorDef * > factor_definitions
all factors defined in the mod file
+
std::vector< SymbolType > prime_variables_by_order
this is the order in which they appear in derivative block this is required while printing them in in...
+
std::vector< SymbolType > pointer_variables
pointer or bbcore pointer variables
+
bool is_watch_used() const noexcept
if watch statements are used
int thread_var_thread_id
thread id for thread promoted variables
bool nrn_state_has_eigen_solver_block() const
true if EigenNewtonSolver is used in nrn_state block
-
std::vector< SymbolType > range_parameter_vars
range variables which are parameter as well
+
std::vector< SymbolType > range_parameter_vars
range variables which are parameter as well
int top_local_thread_id
Top local variables are those local variables that appear in global scope.
Represent conductance statements used in mod file.
-
std::shared_ptr< symtab::Symbol > SymbolType
-
const ast::DestructorBlock * destructor_node
destructor block only for point process
-
std::vector< const ast::Block * > before_after_blocks
all before after blocks
+
std::shared_ptr< symtab::Symbol > SymbolType
+
const ast::DestructorBlock * destructor_node
destructor block only for point process
+
std::vector< const ast::Block * > before_after_blocks
all before after blocks
bool is_ionic_conc(const std::string &name) const noexcept
if given variable is a ionic concentration
int num_equations
number of equations (i.e.
bool is_ion_variable(const std::string &name) const noexcept
if either read or write variable
-
std::vector< SymbolType > use_ion_variables
new one used in print_ion_types
+
std::vector< SymbolType > use_ion_variables
new one used in print_ion_types
bool is_current(const std::string &name) const noexcept
if given variable is a current
-
std::vector< SymbolType > assigned_vars
remaining assigned variables
+
std::vector< SymbolType > assigned_vars
remaining assigned variables
bool write_concentration
if write concentration call required in initial block
-
std::vector< SymbolType > random_variables
RANDOM variables.
+
std::vector< SymbolType > random_variables
RANDOM variables.
std::vector< std::string > reads
ion variables that are being read
-
std::vector< SymbolType > range_state_vars
state variables excluding such useion read/write variables that are not ionic currents.
+
std::vector< SymbolType > range_state_vars
state variables excluding such useion read/write variables that are not ionic currents.
bool is_ionic_current(const std::string &text) const
Check if variable name is a ionic current.
Ion(std::string name)
diff --git a/html/doxygen/codegen__neuron__cpp__visitor_8hpp_source.html b/html/doxygen/codegen__neuron__cpp__visitor_8hpp_source.html index f7f1972127..b99a1f5534 100644 --- a/html/doxygen/codegen__neuron__cpp__visitor_8hpp_source.html +++ b/html/doxygen/codegen__neuron__cpp__visitor_8hpp_source.html @@ -244,639 +244,655 @@
148 
149 
150  /**
-
151  * Print function and procedures prototype declaration
-
152  */
-
153  void print_function_prototypes() override;
-
154 
-
155 
-
156  /**
-
157  * Print nmodl function or procedure (common code)
-
158  * \param node the AST node representing the function or procedure in NMODL
-
159  * \param name the name of the function or procedure
+
151  * Print POINT_PROCESS related functions
+
152  * Wrap external NEURON functions related to POINT_PROCESS mechanisms
+
153  *
+
154  */
+ +
156 
+
157  /**
+
158  * Print NEURON functions related to setting global variables of the mechanism
+
159  *
160  */
-
161  void print_function_or_procedure(const ast::Block& node, const std::string& name) override;
+
162 
163 
164  /**
-
165  * Common helper function to help printing function or procedure blocks
-
166  * \param node the AST node representing the function or procedure in NMODL
-
167  */
-
168  void print_function_procedure_helper(const ast::Block& node) override;
-
169 
-
170 
-
171  /**
-
172  * Print NMODL procedure in target backend code
-
173  * \param node
+
165  * Print function and procedures prototype declaration
+
166  */
+
167  void print_function_prototypes() override;
+
168 
+
169 
+
170  /**
+
171  * Print nmodl function or procedure (common code)
+
172  * \param node the AST node representing the function or procedure in NMODL
+
173  * \param name the name of the function or procedure
174  */
-
175  virtual void print_procedure(const ast::ProcedureBlock& node) override;
+
175  void print_function_or_procedure(const ast::Block& node, const std::string& name) override;
176 
177 
178  /**
-
179  * Print NMODL function in target backend code
-
180  * \param node
+
179  * Common helper function to help printing function or procedure blocks
+
180  * \param node the AST node representing the function or procedure in NMODL
181  */
-
182  void print_function(const ast::FunctionBlock& node) override;
+
182  void print_function_procedure_helper(const ast::Block& node) override;
183 
-
184 
-
185  /****************************************************************************************/
-
186  /* Code-specific helper routines */
-
187  /****************************************************************************************/
-
188 
-
189 
-
190  /**
-
191  * Arguments for functions that are defined and used internally.
-
192  * \return the method arguments
-
193  */
-
194  std::string internal_method_arguments() override;
-
195 
-
196 
-
197  /**
-
198  * Parameters for internally defined functions
-
199  * \return the method parameters
-
200  */
- +
184 
+
185  /**
+
186  * Print NMODL procedure in target backend code
+
187  * \param node
+
188  */
+
189  virtual void print_procedure(const ast::ProcedureBlock& node) override;
+
190 
+
191 
+
192  /**
+
193  * Print NMODL function in target backend code
+
194  * \param node
+
195  */
+
196  void print_function(const ast::FunctionBlock& node) override;
+
197 
+
198 
+
199  /****************************************************************************************/
+
200  /* Code-specific helper routines */
+
201  /****************************************************************************************/
202 
203 
204  /**
-
205  * Arguments for external functions called from generated code
-
206  * \return A string representing the arguments passed to an external function
+
205  * Arguments for functions that are defined and used internally.
+
206  * \return the method arguments
207  */
-
208  const char* external_method_arguments() noexcept override;
+
208  std::string internal_method_arguments() override;
209 
210 
211  /**
-
212  * Parameters for functions in generated code that are called back from external code
-
213  *
-
214  * Functions registered in NEURON during initialization for callback must adhere to a prescribed
-
215  * calling convention. This method generates the string representing the function parameters for
-
216  * these externally called functions.
-
217  * \param table
-
218  * \return A string representing the parameters of the function
-
219  */
-
220  const char* external_method_parameters(bool table = false) noexcept override;
-
221 
-
222 
-
223  /**
-
224  * Arguments for "_threadargs_" macro in neuron implementation
-
225  */
-
226  std::string nrn_thread_arguments() const override;
-
227 
-
228 
-
229  /**
-
230  * Arguments for "_threadargs_" macro in neuron implementation
-
231  */
-
232  std::string nrn_thread_internal_arguments() override;
-
233 
-
234 
-
235  /**
-
236  * Process a verbatim block for possible variable renaming
-
237  * \param text The verbatim code to be processed
-
238  * \return The code with all variables renamed as needed
+
212  * Parameters for internally defined functions
+
213  * \return the method parameters
+
214  */
+ +
216 
+
217 
+
218  /**
+
219  * Arguments for external functions called from generated code
+
220  * \return A string representing the arguments passed to an external function
+
221  */
+
222  const char* external_method_arguments() noexcept override;
+
223 
+
224 
+
225  /**
+
226  * Parameters for functions in generated code that are called back from external code
+
227  *
+
228  * Functions registered in NEURON during initialization for callback must adhere to a prescribed
+
229  * calling convention. This method generates the string representing the function parameters for
+
230  * these externally called functions.
+
231  * \param table
+
232  * \return A string representing the parameters of the function
+
233  */
+
234  const char* external_method_parameters(bool table = false) noexcept override;
+
235 
+
236 
+
237  /**
+
238  * Arguments for "_threadargs_" macro in neuron implementation
239  */
-
240  std::string process_verbatim_text(std::string const& text) override;
+
240  std::string nrn_thread_arguments() const override;
241 
242 
243  /**
-
244  * Arguments for register_mech or point_register_mech function
+
244  * Arguments for "_threadargs_" macro in neuron implementation
245  */
-
246  std::string register_mechanism_arguments() const override;
+
246  std::string nrn_thread_internal_arguments() override;
247 
-
248  std::string conc_write_statement(const std::string& ion_name,
-
249  const std::string& concentration,
-
250  int index) override;
-
251 
-
252  /****************************************************************************************/
-
253  /* Code-specific printing routines for code generations */
-
254  /****************************************************************************************/
+
248 
+
249  /**
+
250  * Process a verbatim block for possible variable renaming
+
251  * \param text The verbatim code to be processed
+
252  * \return The code with all variables renamed as needed
+
253  */
+
254  std::string process_verbatim_text(std::string const& text) override;
255 
256 
257  /**
-
258  * Prints the start of the \c neuron namespace
+
258  * Arguments for register_mech or point_register_mech function
259  */
-
260  void print_namespace_start() override;
+
260  std::string register_mechanism_arguments() const override;
261 
-
262 
-
263  /**
-
264  * Prints the end of the \c neuron namespace
-
265  */
-
266  void print_namespace_stop() override;
-
267 
-
268 
-
269  /****************************************************************************************/
-
270  /* Routines for returning variable name */
-
271  /****************************************************************************************/
-
272 
-
273 
-
274  /**
-
275  * Determine the name of a \c float variable given its symbol
-
276  *
-
277  * This function typically returns the accessor expression in backend code for the given symbol.
-
278  * Since the model variables are stored in data arrays and accessed by offset, this function
-
279  * will return the C++ string representing the array access at the correct offset
-
280  *
-
281  * \param symbol The symbol of a variable for which we want to obtain its name
-
282  * \param use_instance Should the variable be accessed via instance or data array
-
283  * \return The backend code string representing the access to the given variable
-
284  * symbol
-
285  */
-
286  std::string float_variable_name(const SymbolType& symbol, bool use_instance) const override;
-
287 
-
288 
-
289  /**
-
290  * Determine the name of an \c int variable given its symbol
-
291  *
-
292  * This function typically returns the accessor expression in backend code for the given symbol.
-
293  * Since the model variables are stored in data arrays and accessed by offset, this function
-
294  * will return the C++ string representing the array access at the correct offset
-
295  *
-
296  * \param symbol The symbol of a variable for which we want to obtain its name
-
297  * \param name The name of the index variable
-
298  * \param use_instance Should the variable be accessed via instance or data array
-
299  * \return The backend code string representing the access to the given variable
-
300  * symbol
-
301  */
-
302  std::string int_variable_name(const IndexVariableInfo& symbol,
-
303  const std::string& name,
-
304  bool use_instance) const override;
-
305 
-
306 
-
307  /**
-
308  * Determine the variable name for a global variable given its symbol
-
309  * \param symbol The symbol of a variable for which we want to obtain its name
-
310  * \param use_instance Should the variable be accessed via the (host-only)
-
311  * global variable or the instance-specific copy (also available on GPU).
-
312  * \return The C++ string representing the access to the global variable
-
313  */
-
314  std::string global_variable_name(const SymbolType& symbol,
-
315  bool use_instance = true) const override;
-
316 
-
317 
-
318  /**
-
319  * Determine variable name in the structure of mechanism properties
-
320  *
-
321  * \param name Variable name that is being printed
-
322  * \param use_instance Should the variable be accessed via instance or data array
-
323  * \return The C++ string representing the access to the variable in the neuron
-
324  * thread structure
-
325  */
-
326  std::string get_variable_name(const std::string& name, bool use_instance = true) const override;
-
327 
-
328 
-
329  /****************************************************************************************/
-
330  /* Main printing routines for code generation */
-
331  /****************************************************************************************/
-
332 
-
333 
-
334  /**
-
335  * Print top file header printed in generated code
-
336  */
-
337  void print_backend_info() override;
-
338 
-
339 
-
340  /**
-
341  * Print standard C/C++ includes
-
342  */
-
343  void print_standard_includes() override;
-
344 
-
345 
-
346  /**
-
347  * Print includes from NEURON
-
348  */
-
349  void print_neuron_includes();
-
350 
-
351 
-
352  void print_sdlists_init(bool print_initializers) override;
-
353 
-
354 
-
355  /**
-
356  * Print the structure that wraps all global variables used in the NMODL
-
357  *
-
358  * \param print_initializers Whether to include default values in the struct
-
359  * definition (true: int foo{42}; false: int foo;)
-
360  */
-
361  void print_mechanism_global_var_structure(bool print_initializers) override;
-
362 
-
363 
-
364  /**
-
365  * Print byte arrays that register scalar and vector variables for hoc interface
-
366  *
-
367  */
-
368  void print_global_variables_for_hoc() override;
-
369 
-
370 
-
371  /**
-
372  * Print the mechanism registration function
-
373  *
+
262  std::string conc_write_statement(const std::string& ion_name,
+
263  const std::string& concentration,
+
264  int index) override;
+
265 
+
266  /****************************************************************************************/
+
267  /* Code-specific printing routines for code generations */
+
268  /****************************************************************************************/
+
269 
+
270 
+
271  /**
+
272  * Prints the start of the \c neuron namespace
+
273  */
+
274  void print_namespace_start() override;
+
275 
+
276 
+
277  /**
+
278  * Prints the end of the \c neuron namespace
+
279  */
+
280  void print_namespace_stop() override;
+
281 
+
282 
+
283  /****************************************************************************************/
+
284  /* Routines for returning variable name */
+
285  /****************************************************************************************/
+
286 
+
287 
+
288  /**
+
289  * Determine the name of a \c float variable given its symbol
+
290  *
+
291  * This function typically returns the accessor expression in backend code for the given symbol.
+
292  * Since the model variables are stored in data arrays and accessed by offset, this function
+
293  * will return the C++ string representing the array access at the correct offset
+
294  *
+
295  * \param symbol The symbol of a variable for which we want to obtain its name
+
296  * \param use_instance Should the variable be accessed via instance or data array
+
297  * \return The backend code string representing the access to the given variable
+
298  * symbol
+
299  */
+
300  std::string float_variable_name(const SymbolType& symbol, bool use_instance) const override;
+
301 
+
302 
+
303  /**
+
304  * Determine the name of an \c int variable given its symbol
+
305  *
+
306  * This function typically returns the accessor expression in backend code for the given symbol.
+
307  * Since the model variables are stored in data arrays and accessed by offset, this function
+
308  * will return the C++ string representing the array access at the correct offset
+
309  *
+
310  * \param symbol The symbol of a variable for which we want to obtain its name
+
311  * \param name The name of the index variable
+
312  * \param use_instance Should the variable be accessed via instance or data array
+
313  * \return The backend code string representing the access to the given variable
+
314  * symbol
+
315  */
+
316  std::string int_variable_name(const IndexVariableInfo& symbol,
+
317  const std::string& name,
+
318  bool use_instance) const override;
+
319 
+
320 
+
321  /**
+
322  * Determine the variable name for a global variable given its symbol
+
323  * \param symbol The symbol of a variable for which we want to obtain its name
+
324  * \param use_instance Should the variable be accessed via the (host-only)
+
325  * global variable or the instance-specific copy (also available on GPU).
+
326  * \return The C++ string representing the access to the global variable
+
327  */
+
328  std::string global_variable_name(const SymbolType& symbol,
+
329  bool use_instance = true) const override;
+
330 
+
331 
+
332  /**
+
333  * Determine variable name in the structure of mechanism properties
+
334  *
+
335  * \param name Variable name that is being printed
+
336  * \param use_instance Should the variable be accessed via instance or data array
+
337  * \return The C++ string representing the access to the variable in the neuron
+
338  * thread structure
+
339  */
+
340  std::string get_variable_name(const std::string& name, bool use_instance = true) const override;
+
341 
+
342 
+
343  /****************************************************************************************/
+
344  /* Main printing routines for code generation */
+
345  /****************************************************************************************/
+
346 
+
347 
+
348  /**
+
349  * Print top file header printed in generated code
+
350  */
+
351  void print_backend_info() override;
+
352 
+
353 
+
354  /**
+
355  * Print standard C/C++ includes
+
356  */
+
357  void print_standard_includes() override;
+
358 
+
359 
+
360  /**
+
361  * Print includes from NEURON
+
362  */
+
363  void print_neuron_includes();
+
364 
+
365 
+
366  void print_sdlists_init(bool print_initializers) override;
+
367 
+
368 
+
369  /**
+
370  * Print the structure that wraps all global variables used in the NMODL
+
371  *
+
372  * \param print_initializers Whether to include default values in the struct
+
373  * definition (true: int foo{42}; false: int foo;)
374  */
-
375  void print_mechanism_register() override;
+
375  void print_mechanism_global_var_structure(bool print_initializers) override;
376 
377 
378  /**
-
379  * Print common code for global functions like nrn_init, nrn_cur and nrn_state
-
380  * \param type The target backend code block type
+
379  * Print byte arrays that register scalar and vector variables for hoc interface
+
380  *
381  */
- -
383  const std::string& function_name = "") override;
-
384 
-
385 
-
386  /**
-
387  * Print the \c nrn\_init function definition
-
388  * \param skip_init_check \c true to generate code executing the initialization conditionally
-
389  */
-
390  void print_nrn_init(bool skip_init_check = true);
+
382  void print_global_variables_for_hoc() override;
+
383 
+
384 
+
385  /**
+
386  * Print the mechanism registration function
+
387  *
+
388  */
+
389  void print_mechanism_register() override;
+
390 
391 
-
392  /** Print the initial block. */
-
393  void print_initial_block(const ast::InitialBlock* node);
-
394 
-
395  /**
-
396  * Print nrn_constructor function definition
-
397  *
-
398  */
-
399  void print_nrn_constructor() override;
-
400 
-
401 
-
402  /**
-
403  * Print nrn_destructor function definition
-
404  *
-
405  */
-
406  void print_nrn_destructor() override;
-
407 
+
392  /**
+
393  * Print common code for global functions like nrn_init, nrn_cur and nrn_state
+
394  * \param type The target backend code block type
+
395  */
+ +
397  const std::string& function_name = "") override;
+
398 
+
399 
+
400  /**
+
401  * Print the \c nrn\_init function definition
+
402  * \param skip_init_check \c true to generate code executing the initialization conditionally
+
403  */
+
404  void print_nrn_init(bool skip_init_check = true);
+
405 
+
406  /** Print the initial block. */
+
407  void print_initial_block(const ast::InitialBlock* node);
408 
409  /**
-
410  * Print nrn_alloc function definition
+
410  * Print nrn_constructor function definition
411  *
412  */
-
413  void print_nrn_alloc() override;
+
413  void print_nrn_constructor() override;
414 
415 
416  /**
-
417  * Print nrn_jacob function definition
+
417  * Print nrn_destructor function definition
418  *
419  */
-
420  void print_nrn_jacob();
+
420  void print_nrn_destructor() override;
421 
-
422 
-
423  /****************************************************************************************/
-
424  /* Print nrn_state routine */
-
425  /****************************************************************************************/
-
426 
-
427 
-
428  /**
-
429  * Print nrn_state / state update function definition
-
430  */
-
431  void print_nrn_state() override;
-
432 
-
433 
-
434  /****************************************************************************************/
-
435  /* Print nrn_cur related routines */
-
436  /****************************************************************************************/
-
437 
-
438 
-
439  /**
-
440  * Print the \c nrn_current kernel
-
441  *
-
442  * \note nrn_cur_kernel will have two calls to nrn_current if no conductance keywords specified
-
443  * \param node the AST node representing the NMODL breakpoint block
+
422 
+
423  /**
+
424  * Print nrn_alloc function definition
+
425  *
+
426  */
+
427  void print_nrn_alloc() override;
+
428 
+
429 
+
430  /**
+
431  * Print nrn_jacob function definition
+
432  *
+
433  */
+
434  void print_nrn_jacob();
+
435 
+
436 
+
437  /****************************************************************************************/
+
438  /* Print nrn_state routine */
+
439  /****************************************************************************************/
+
440 
+
441 
+
442  /**
+
443  * Print nrn_state / state update function definition
444  */
-
445  void print_nrn_current(const ast::BreakpointBlock& node) override;
+
445  void print_nrn_state() override;
446 
-
447 
-
448  /**
-
449  * Print the \c nrn\_cur kernel with NMODL \c conductance keyword provisions
-
450  *
-
451  * If the NMODL \c conductance keyword is used in the \c breakpoint block, then
-
452  * CodegenCoreneuronCppVisitor::print_nrn_cur_kernel will use this printer
-
453  *
-
454  * \param node the AST node representing the NMODL breakpoint block
-
455  */
-
456  void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock& node) override;
-
457 
-
458 
-
459  /**
-
460  * Print the \c nrn\_cur kernel without NMODL \c conductance keyword provisions
-
461  *
-
462  * If the NMODL \c conductance keyword is \b not used in the \c breakpoint block, then
-
463  * CodegenCoreneuronCppVisitor::print_nrn_cur_kernel will use this printer
-
464  */
-
465  void print_nrn_cur_non_conductance_kernel() override;
-
466 
-
467 
-
468  /**
-
469  * Print main body of nrn_cur function
-
470  * \param node the AST node representing the NMODL breakpoint block
-
471  */
-
472  void print_nrn_cur_kernel(const ast::BreakpointBlock& node) override;
-
473 
-
474 
-
475  /**
-
476  * Print fast membrane current calculation code
-
477  */
-
478  virtual void print_fast_imem_calculation() override;
-
479 
-
480 
-
481  /**
-
482  * Print nrn_cur / current update function definition
-
483  */
-
484  void print_nrn_cur() override;
-
485 
-
486 
-
487  /****************************************************************************************/
-
488  /* Main code printing entry points */
-
489  /****************************************************************************************/
-
490 
-
491 
-
492  /**
-
493  * Print all includes
-
494  *
-
495  */
-
496  void print_headers_include() override;
-
497 
-
498 
-
499  /**
-
500  * Print all NEURON macros
-
501  *
-
502  */
- +
447 
+
448  /****************************************************************************************/
+
449  /* Print nrn_cur related routines */
+
450  /****************************************************************************************/
+
451 
+
452 
+
453  /**
+
454  * Print the \c nrn_current kernel
+
455  *
+
456  * \note nrn_cur_kernel will have two calls to nrn_current if no conductance keywords specified
+
457  * \param node the AST node representing the NMODL breakpoint block
+
458  */
+
459  void print_nrn_current(const ast::BreakpointBlock& node) override;
+
460 
+
461 
+
462  /**
+
463  * Print the \c nrn\_cur kernel with NMODL \c conductance keyword provisions
+
464  *
+
465  * If the NMODL \c conductance keyword is used in the \c breakpoint block, then
+
466  * CodegenCoreneuronCppVisitor::print_nrn_cur_kernel will use this printer
+
467  *
+
468  * \param node the AST node representing the NMODL breakpoint block
+
469  */
+
470  void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock& node) override;
+
471 
+
472 
+
473  /**
+
474  * Print the \c nrn\_cur kernel without NMODL \c conductance keyword provisions
+
475  *
+
476  * If the NMODL \c conductance keyword is \b not used in the \c breakpoint block, then
+
477  * CodegenCoreneuronCppVisitor::print_nrn_cur_kernel will use this printer
+
478  */
+
479  void print_nrn_cur_non_conductance_kernel() override;
+
480 
+
481 
+
482  /**
+
483  * Print main body of nrn_cur function
+
484  * \param node the AST node representing the NMODL breakpoint block
+
485  */
+
486  void print_nrn_cur_kernel(const ast::BreakpointBlock& node) override;
+
487 
+
488 
+
489  /**
+
490  * Print fast membrane current calculation code
+
491  */
+
492  virtual void print_fast_imem_calculation() override;
+
493 
+
494 
+
495  /**
+
496  * Print nrn_cur / current update function definition
+
497  */
+
498  void print_nrn_cur() override;
+
499 
+
500 
+
501  /****************************************************************************************/
+
502  /* Main code printing entry points */
+
503  /****************************************************************************************/
504 
505 
506  /**
-
507  * Print NEURON global variable macros
+
507  * Print all includes
508  *
509  */
-
510  void print_global_macros();
+
510  void print_headers_include() override;
511 
512 
513  /**
-
514  * Print mechanism variables' related macros
+
514  * Print all NEURON macros
515  *
516  */
- +
518 
519 
520  /**
-
521  * Print start of namespaces
+
521  * Print NEURON global variable macros
522  *
523  */
-
524  void print_namespace_begin() override;
+
524  void print_global_macros();
525 
526 
527  /**
-
528  * Print end of namespaces
+
528  * Print mechanism variables' related macros
529  *
530  */
-
531  void print_namespace_end() override;
+
532 
533 
534  /**
-
535  * Print all classes
-
536  * \param print_initializers Whether to include default values.
+
535  * Print start of namespaces
+
536  *
537  */
-
538  void print_data_structures(bool print_initializers) override;
-
539 
-
540  /** Print `make_*_instance`.
-
541  */
-
542  void print_make_instance() const;
-
543 
-
544  /**
-
545  * Set v_unused (voltage) for NRN_PRCELLSTATE feature
-
546  */
-
547  void print_v_unused() const override;
-
548 
-
549 
-
550  /**
-
551  * Set g_unused (conductance) for NRN_PRCELLSTATE feature
-
552  */
-
553  void print_g_unused() const override;
-
554 
-
555 
-
556  /**
-
557  * Print all compute functions for every backend
-
558  *
-
559  */
-
560  virtual void print_compute_functions() override;
-
561 
-
562 
-
563  /**
-
564  * Print entry point to code generation
-
565  *
+
538  void print_namespace_begin() override;
+
539 
+
540 
+
541  /**
+
542  * Print end of namespaces
+
543  *
+
544  */
+
545  void print_namespace_end() override;
+
546 
+
547 
+
548  /**
+
549  * Print all classes
+
550  * \param print_initializers Whether to include default values.
+
551  */
+
552  void print_data_structures(bool print_initializers) override;
+
553 
+
554  /** Print `make_*_instance`.
+
555  */
+
556  void print_make_instance() const;
+
557 
+
558  /**
+
559  * Set v_unused (voltage) for NRN_PRCELLSTATE feature
+
560  */
+
561  void print_v_unused() const override;
+
562 
+
563 
+
564  /**
+
565  * Set g_unused (conductance) for NRN_PRCELLSTATE feature
566  */
-
567  void print_codegen_routines() override;
+
567  void print_g_unused() const override;
568 
-
569 
-
570  /****************************************************************************************/
-
571  /* Overloaded visitor routines */
-
572  /****************************************************************************************/
-
573 
-
574 
-
575  virtual void visit_watch_statement(const ast::WatchStatement& node) override;
-
576 
-
577 
-
578  /**
-
579  * Print prototype declarations of functions or procedures
-
580  * \tparam T The AST node type of the node (must be of nmodl::ast::Ast or subclass)
-
581  * \param node The AST node representing the function or procedure block
-
582  * \param name A user defined name for the function
-
583  */
-
584  template <typename T>
-
585  void print_function_declaration(const T& node, const std::string& name);
-
586 
+
569 
+
570  /**
+
571  * Print all compute functions for every backend
+
572  *
+
573  */
+
574  virtual void print_compute_functions() override;
+
575 
+
576 
+
577  /**
+
578  * Print entry point to code generation
+
579  *
+
580  */
+
581  void print_codegen_routines() override;
+
582 
+
583 
+
584  /****************************************************************************************/
+
585  /* Overloaded visitor routines */
+
586  /****************************************************************************************/
587 
-
588  public:
-
589  /**
-
590  * \brief Constructs the C++ code generator visitor
-
591  *
-
592  * This constructor instantiates an NMODL C++ code generator and allows writing generated code
-
593  * directly to a file in \c [output_dir]/[mod_filename].cpp.
-
594  *
-
595  * \note No code generation is performed at this stage. Since the code
-
596  * generator classes are all based on \c AstVisitor the AST must be visited using e.g. \c
-
597  * visit_program in order to generate the C++ code corresponding to the AST.
-
598  *
-
599  * \param mod_filename The name of the model for which code should be generated.
-
600  * It is used for constructing an output filename.
-
601  * \param output_dir The directory where target C++ file should be generated.
-
602  * \param float_type The float type to use in the generated code. The string will be used
-
603  * as-is in the target code. This defaults to \c double.
-
604  */
- -
606  const std::string& output_dir,
-
607  std::string float_type,
-
608  const bool optimize_ionvar_copies)
- -
610 
-
611  /**
-
612  * \copybrief nmodl::codegen::CodegenNeuronCppVisitor
-
613  *
-
614  * This constructor instantiates an NMODL C++ code generator and allows writing generated code
-
615  * into an output stream.
-
616  *
-
617  * \note No code generation is performed at this stage. Since the code
-
618  * generator classes are all based on \c AstVisitor the AST must be visited using e.g. \c
-
619  * visit_program in order to generate the C++ code corresponding to the AST.
-
620  *
-
621  * \param mod_filename The name of the model for which code should be generated.
-
622  * It is used for constructing an output filename.
-
623  * \param stream The output stream onto which to write the generated code
-
624  * \param float_type The float type to use in the generated code. The string will be used
-
625  * as-is in the target code. This defaults to \c double.
-
626  */
- -
628  std::ostream& stream,
-
629  std::string float_type,
-
630  const bool optimize_ionvar_copies)
- -
632 
-
633 
-
634  /****************************************************************************************/
-
635  /* Public printing routines for code generation for use in unit tests */
-
636  /****************************************************************************************/
-
637 
-
638 
-
639  /**
-
640  * Print the structure that wraps all range and int variables required for the NMODL
-
641  *
-
642  * \param print_initializers Whether or not default values for variables
-
643  * be included in the struct declaration.
-
644  */
-
645  void print_mechanism_range_var_structure(bool print_initializers) override;
-
646 };
+
588 
+
589  virtual void visit_watch_statement(const ast::WatchStatement& node) override;
+
590 
+
591 
+
592  /**
+
593  * Print prototype declarations of functions or procedures
+
594  * \tparam T The AST node type of the node (must be of nmodl::ast::Ast or subclass)
+
595  * \param node The AST node representing the function or procedure block
+
596  * \param name A user defined name for the function
+
597  */
+
598  template <typename T>
+
599  void print_function_declaration(const T& node, const std::string& name);
+
600 
+
601 
+
602  public:
+
603  /**
+
604  * \brief Constructs the C++ code generator visitor
+
605  *
+
606  * This constructor instantiates an NMODL C++ code generator and allows writing generated code
+
607  * directly to a file in \c [output_dir]/[mod_filename].cpp.
+
608  *
+
609  * \note No code generation is performed at this stage. Since the code
+
610  * generator classes are all based on \c AstVisitor the AST must be visited using e.g. \c
+
611  * visit_program in order to generate the C++ code corresponding to the AST.
+
612  *
+
613  * \param mod_filename The name of the model for which code should be generated.
+
614  * It is used for constructing an output filename.
+
615  * \param output_dir The directory where target C++ file should be generated.
+
616  * \param float_type The float type to use in the generated code. The string will be used
+
617  * as-is in the target code. This defaults to \c double.
+
618  */
+ +
620  const std::string& output_dir,
+
621  std::string float_type,
+
622  const bool optimize_ionvar_copies)
+ +
624 
+
625  /**
+
626  * \copybrief nmodl::codegen::CodegenNeuronCppVisitor
+
627  *
+
628  * This constructor instantiates an NMODL C++ code generator and allows writing generated code
+
629  * into an output stream.
+
630  *
+
631  * \note No code generation is performed at this stage. Since the code
+
632  * generator classes are all based on \c AstVisitor the AST must be visited using e.g. \c
+
633  * visit_program in order to generate the C++ code corresponding to the AST.
+
634  *
+
635  * \param mod_filename The name of the model for which code should be generated.
+
636  * It is used for constructing an output filename.
+
637  * \param stream The output stream onto which to write the generated code
+
638  * \param float_type The float type to use in the generated code. The string will be used
+
639  * as-is in the target code. This defaults to \c double.
+
640  */
+ +
642  std::ostream& stream,
+
643  std::string float_type,
+
644  const bool optimize_ionvar_copies)
+ +
646 
647 
-
648 
-
649 /**
-
650  * \details If there is an argument with name (say alpha) same as range variable (say alpha),
-
651  * we want to avoid it being printed as instance->alpha. And hence we disable variable
-
652  * name lookup during prototype declaration. Note that the name of procedure can be
-
653  * different in case of table statement.
-
654  */
-
655 template <typename T>
-
656 void CodegenNeuronCppVisitor::print_function_declaration(const T& node, const std::string& name) {
- -
658  auto type = default_float_data_type();
-
659 
-
660  // internal and user provided arguments
-
661  auto internal_params = internal_method_parameters();
-
662  const auto& params = node.get_parameters();
-
663  for (const auto& param: params) {
-
664  internal_params.emplace_back("", type, "", param.get()->get_node_name());
-
665  }
-
666 
-
667  // procedures have "int" return type by default
-
668  const char* return_type = "int";
-
669  if (node.is_function_block()) {
-
670  return_type = default_float_data_type();
-
671  }
-
672 
-
673  /// TODO: Edit for NEURON
-
674  printer->add_indent();
-
675  printer->fmt_text("inline {} {}({})",
-
676  return_type,
-
677  method_name(name),
-
678  get_parameter_str(internal_params));
-
679 
- -
681 }
-
682 
-
683 /** \} */ // end of codegen_backends
-
684 
-
685 } // namespace codegen
-
686 } // namespace nmodl
+
648  /****************************************************************************************/
+
649  /* Public printing routines for code generation for use in unit tests */
+
650  /****************************************************************************************/
+
651 
+
652 
+
653  /**
+
654  * Print the structure that wraps all range and int variables required for the NMODL
+
655  *
+
656  * \param print_initializers Whether or not default values for variables
+
657  * be included in the struct declaration.
+
658  */
+
659  void print_mechanism_range_var_structure(bool print_initializers) override;
+
660 };
+
661 
+
662 
+
663 /**
+
664  * \details If there is an argument with name (say alpha) same as range variable (say alpha),
+
665  * we want to avoid it being printed as instance->alpha. And hence we disable variable
+
666  * name lookup during prototype declaration. Note that the name of procedure can be
+
667  * different in case of table statement.
+
668  */
+
669 template <typename T>
+
670 void CodegenNeuronCppVisitor::print_function_declaration(const T& node, const std::string& name) {
+ +
672  auto type = default_float_data_type();
+
673 
+
674  // internal and user provided arguments
+
675  auto internal_params = internal_method_parameters();
+
676  const auto& params = node.get_parameters();
+
677  for (const auto& param: params) {
+
678  internal_params.emplace_back("", type, "", param.get()->get_node_name());
+
679  }
+
680 
+
681  // procedures have "int" return type by default
+
682  const char* return_type = "int";
+
683  if (node.is_function_block()) {
+
684  return_type = default_float_data_type();
+
685  }
+
686 
+
687  /// TODO: Edit for NEURON
+
688  printer->add_indent();
+
689  printer->fmt_text("inline {} {}({})",
+
690  return_type,
+
691  method_name(name),
+
692  get_parameter_str(internal_params));
+
693 
+ +
695 }
+
696 
+
697 /** \} */ // end of codegen_backends
+
698 
+
699 } // namespace codegen
+
700 } // namespace nmodl
-
const char * external_method_parameters(bool table=false) noexcept override
Parameters for functions in generated code that are called back from external code.
-
void print_nrn_destructor() override
Print nrn_destructor function definition.
-
void print_nrn_cur_non_conductance_kernel() override
Print the nrn_cur kernel without NMODL conductance keyword provisions.
+
const char * external_method_parameters(bool table=false) noexcept override
Parameters for functions in generated code that are called back from external code.
+
void print_nrn_destructor() override
Print nrn_destructor function definition.
+
void print_nrn_cur_non_conductance_kernel() override
Print the nrn_cur kernel without NMODL conductance keyword provisions.
Helper to represent information about index/int variables.
-
void print_nrn_cur() override
Print nrn_cur / current update function definition.
-
void print_macro_definitions()
Print all NEURON macros.
+
void print_nrn_cur() override
Print nrn_cur / current update function definition.
+
void print_macro_definitions()
Print all NEURON macros.
-
void print_net_event_call(const ast::FunctionCall &node) override
Print call to net_event.
-
void print_neuron_includes()
Print includes from NEURON.
-
void print_nrn_init(bool skip_init_check=true)
Print the nrn_init function definition.
+
void print_net_event_call(const ast::FunctionCall &node) override
Print call to net_event.
+
void print_neuron_includes()
Print includes from NEURON.
+
void print_nrn_init(bool skip_init_check=true)
Print the nrn_init function definition.
bool optimize_ionvar_copies
Flag to indicate if visitor should avoid ion variable copies.
-
std::string internal_method_arguments() override
Arguments for functions that are defined and used internally.
+
std::string internal_method_arguments() override
Arguments for functions that are defined and used internally.
std::shared_ptr< symtab::Symbol > SymbolType
-
void print_nrn_alloc() override
Print nrn_alloc function definition.
-
std::string register_mechanism_arguments() const override
Arguments for register_mech or point_register_mech function.
+
void print_nrn_alloc() override
Print nrn_alloc function definition.
+
std::string register_mechanism_arguments() const override
Arguments for register_mech or point_register_mech function.
int position_of_int_var(const std::string &name) const override
Determine the position in the data array for a given int variable.
bool optimize_ion_variable_copies() const override
Check if ion variable copies should be avoided.
-
ParamVector internal_method_parameters() override
Parameters for internally defined functions.
+
ParamVector internal_method_parameters() override
Parameters for internally defined functions.
encapsulates code generation backend implementations
Definition: ast_common.hpp:26
@ index
index / int variables
-
std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const override
Determine the variable name for a global variable given its symbol.
-
std::string nrn_thread_internal_arguments() override
Arguments for "_threadargs_" macro in neuron implementation.
+
std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const override
Determine the variable name for a global variable given its symbol.
+
std::string nrn_thread_internal_arguments() override
Arguments for "_threadargs_" macro in neuron implementation.
Implement classes for representing symbol table at block and file scope.
virtual std::string backend_name() const override
Name of the code generation backend.
-
std::string process_verbatim_text(std::string const &text) override
Process a verbatim block for possible variable renaming.
-
void print_g_unused() const override
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
-
virtual void visit_watch_statement(const ast::WatchStatement &node) override
TODO: Edit for NEURON.
-
void print_net_send_call(const ast::FunctionCall &node) override
Print call to net_send.
-
void print_namespace_end() override
Print end of namespaces.
-
void print_net_move_call(const ast::FunctionCall &node) override
Print call to net_move.
-
CodegenNeuronCppVisitor(std::string mod_filename, std::ostream &stream, std::string float_type, const bool optimize_ionvar_copies)
Visitor for printing C++ code compatible with legacy api of NEURON
-
void print_nrn_state() override
Print nrn_state / state update function definition.
+
std::string process_verbatim_text(std::string const &text) override
Process a verbatim block for possible variable renaming.
+
void print_g_unused() const override
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
+
virtual void visit_watch_statement(const ast::WatchStatement &node) override
TODO: Edit for NEURON.
+
void print_net_send_call(const ast::FunctionCall &node) override
Print call to net_send.
+
void print_namespace_end() override
Print end of namespaces.
+
void print_net_move_call(const ast::FunctionCall &node) override
Print call to net_move.
+
CodegenNeuronCppVisitor(std::string mod_filename, std::ostream &stream, std::string float_type, const bool optimize_ionvar_copies)
Visitor for printing C++ code compatible with legacy api of NEURON
+
void print_nrn_state() override
Print nrn_state / state update function definition.
const char * default_float_data_type() const noexcept
Default data type for floating point elements.
-
void print_initial_block(const ast::InitialBlock *node)
Print the initial block.
-
virtual void print_global_function_common_code(BlockType type, const std::string &function_name="") override
Print common code for global functions like nrn_init, nrn_cur and nrn_state.
-
std::string float_variable_name(const SymbolType &symbol, bool use_instance) const override
Determine the name of a float variable given its symbol.
-
void print_function(const ast::FunctionBlock &node) override
Print NMODL function in target backend code.
-
void print_v_unused() const override
Set v_unused (voltage) for NRN_PRCELLSTATE feature.
+
void print_initial_block(const ast::InitialBlock *node)
Print the initial block.
+
virtual void print_global_function_common_code(BlockType type, const std::string &function_name="") override
Print common code for global functions like nrn_init, nrn_cur and nrn_state.
+
std::string float_variable_name(const SymbolType &symbol, bool use_instance) const override
Determine the name of a float variable given its symbol.
+
void print_function(const ast::FunctionBlock &node) override
Print NMODL function in target backend code.
+
void print_v_unused() const override
Set v_unused (voltage) for NRN_PRCELLSTATE feature.
Visitor for printing C++ code compatible with legacy api of CoreNEURON
Base class for all block scoped nodes.
Definition: block.hpp:41
Represents a INITIAL block in the NMODL.
+
void print_point_process_function_definitions()
Print POINT_PROCESS related functions Wrap external NEURON functions related to POINT_PROCESS mechani...
Represent WATCH statement in NMODL.
-
void print_function_declaration(const T &node, const std::string &name)
Print prototype declarations of functions or procedures.
+
void print_function_declaration(const T &node, const std::string &name)
Print prototype declarations of functions or procedures.
Represents a BREAKPOINT block in NMODL.
-
void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
Print the nrn_cur kernel with NMODL conductance keyword provisions.
-
std::string int_variable_name(const IndexVariableInfo &symbol, const std::string &name, bool use_instance) const override
Determine the name of an int variable given its symbol.
-
void print_namespace_begin() override
Print start of namespaces.
+
void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
Print the nrn_cur kernel with NMODL conductance keyword provisions.
+
std::string int_variable_name(const IndexVariableInfo &symbol, const std::string &name, bool use_instance) const override
Determine the name of an int variable given its symbol.
+
void print_namespace_begin() override
Print start of namespaces.
-
void print_global_variables_for_hoc() override
Print byte arrays that register scalar and vector variables for hoc interface.
-
void print_standard_includes() override
Print standard C/C++ includes.
-
void print_mechanism_range_var_structure(bool print_initializers) override
Print the structure that wraps all range and int variables required for the NMODL.
-
virtual void print_procedure(const ast::ProcedureBlock &node) override
Print NMODL procedure in target backend code.
+
void print_global_variables_for_hoc() override
Print byte arrays that register scalar and vector variables for hoc interface.
+
void print_standard_includes() override
Print standard C/C++ includes.
+
void print_mechanism_range_var_structure(bool print_initializers) override
Print the structure that wraps all range and int variables required for the NMODL.
+
virtual void print_procedure(const ast::ProcedureBlock &node) override
Print NMODL procedure in target backend code.
Helper class for printing C/C++ code.
-
void print_namespace_start() override
Prints the start of the neuron namespace.
-
void print_backend_info() override
Print top file header printed in generated code.
-
virtual void print_compute_functions() override
Print all compute functions for every backend.
-
void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
Print main body of nrn_cur function.
-
std::string conc_write_statement(const std::string &ion_name, const std::string &concentration, int index) override
Generate Function call statement for nrn_wrote_conc.
-
void print_mechanism_register() override
Print the mechanism registration function.
-
void print_nrn_jacob()
Print nrn_jacob function definition.
+
void print_namespace_start() override
Prints the start of the neuron namespace.
+
void print_backend_info() override
Print top file header printed in generated code.
+
virtual void print_compute_functions() override
Print all compute functions for every backend.
+
void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
Print main body of nrn_cur function.
+
std::string conc_write_statement(const std::string &ion_name, const std::string &concentration, int index) override
Generate Function call statement for nrn_wrote_conc.
+
void print_mechanism_register() override
Print the mechanism registration function.
+
void print_nrn_jacob()
Print nrn_jacob function definition.
Various types to store code generation specific information.
-
virtual void print_fast_imem_calculation() override
Print fast membrane current calculation code.
-
void print_data_structures(bool print_initializers) override
Print all classes.
-
void print_sdlists_init(bool print_initializers) override
+
virtual void print_fast_imem_calculation() override
Print fast membrane current calculation code.
+
void print_data_structures(bool print_initializers) override
Print all classes.
+
void print_sdlists_init(bool print_initializers) override
static std::string get_parameter_str(const ParamVector &params)
Generate the string representing the procedure parameter declaration.
-
void print_make_instance() const
Print make_*_instance.
+
void print_make_instance() const
Print make_*_instance.
virtual void print_atomic_reduction_pragma() override
Print atomic update pragma for reduction statements.
-
void print_namespace_stop() override
Prints the end of the neuron namespace.
+
void print_namespace_stop() override
Prints the end of the neuron namespace.
+
void print_setdata_functions()
Print NEURON functions related to setting global variables of the mechanism.
-
void print_mechanism_variables_macros()
Print mechanism variables' related macros.
+
void print_mechanism_variables_macros()
Print mechanism variables' related macros.
Visitor for printing C++ code compatible with legacy api of NEURON
std::string float_type
Data type of floating point variables.
-
void print_nrn_constructor() override
Print nrn_constructor function definition.
+
void print_nrn_constructor() override
Print nrn_constructor function definition.
Implement logger based on spdlog library.
bool enable_variable_name_lookup
Variable name should be converted to instance name (but not for function arguments)
BlockType
Helper to represent various block types.
-
void print_function_or_procedure(const ast::Block &node, const std::string &name) override
Print nmodl function or procedure (common code)
-
void print_headers_include() override
Print all includes.
-
void print_nrn_current(const ast::BreakpointBlock &node) override
Print the nrn_current kernel.
+
void print_function_or_procedure(const ast::Block &node, const std::string &name) override
Print nmodl function or procedure (common code)
+
void print_headers_include() override
Print all includes.
+
void print_nrn_current(const ast::BreakpointBlock &node) override
Print the nrn_current kernel.
int position_of_float_var(const std::string &name) const override
Determine the position in the data array for a given float variable.
-
std::string get_variable_name(const std::string &name, bool use_instance=true) const override
Determine variable name in the structure of mechanism properties.
+
std::string get_variable_name(const std::string &name, bool use_instance=true) const override
Determine variable name in the structure of mechanism properties.
Visitor for printing C++ code compatible with legacy api of CoreNEURON
std::string mod_filename
Name of mod file (without .mod suffix)
std::string simulator_name() override
Name of the simulator the code was generated for.
-
void print_function_procedure_helper(const ast::Block &node) override
Common helper function to help printing function or procedure blocks.
+
void print_function_procedure_helper(const ast::Block &node) override
Common helper function to help printing function or procedure blocks.
std::unique_ptr< CodePrinter > printer
Code printer object for target (C++)
-
const char * external_method_arguments() noexcept override
Arguments for external functions called from generated code.
+
const char * external_method_arguments() noexcept override
Arguments for external functions called from generated code.
std::string method_name(const std::string &name) const
Constructs the name of a function or procedure.
-
std::string nrn_thread_arguments() const override
Arguments for "_threadargs_" macro in neuron implementation.
-
void print_codegen_routines() override
Print entry point to code generation.
-
CodegenNeuronCppVisitor(std::string mod_filename, const std::string &output_dir, std::string float_type, const bool optimize_ionvar_copies)
Constructs the C++ code generator visitor.
-
void print_function_prototypes() override
Print function and procedures prototype declaration.
-
void print_mechanism_global_var_structure(bool print_initializers) override
Print the structure that wraps all global variables used in the NMODL.
-
void print_global_macros()
Print NEURON global variable macros.
+
std::string nrn_thread_arguments() const override
Arguments for "_threadargs_" macro in neuron implementation.
+
void print_codegen_routines() override
Print entry point to code generation.
+
CodegenNeuronCppVisitor(std::string mod_filename, const std::string &output_dir, std::string float_type, const bool optimize_ionvar_copies)
Constructs the C++ code generator visitor.
+
void print_function_prototypes() override
Print function and procedures prototype declaration.
+
void print_mechanism_global_var_structure(bool print_initializers) override
Print the structure that wraps all global variables used in the NMODL.
+
void print_global_macros()
Print NEURON global variable macros.
std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
A vector of parameters represented by a 4-tuple of strings:
Concrete visitor for all AST classes.
diff --git a/html/doxygen/functions_func_p.html b/html/doxygen/functions_func_p.html index 746927b272..90b8394f6c 100644 --- a/html/doxygen/functions_func_p.html +++ b/html/doxygen/functions_func_p.html @@ -600,6 +600,9 @@

- p -

  • print_num_variable_getter() : nmodl::codegen::CodegenCoreneuronCppVisitor
  • +
  • print_point_process_function_definitions() +: nmodl::codegen::CodegenNeuronCppVisitor +
  • print_prcellstate_macros() : nmodl::codegen::CodegenCppVisitor
  • @@ -620,6 +623,9 @@

    - p -

    • print_send_event_move() : nmodl::codegen::CodegenCoreneuronCppVisitor
    • +
    • print_setdata_functions() +: nmodl::codegen::CodegenNeuronCppVisitor +
    • print_setup_range_variable() : nmodl::codegen::CodegenCoreneuronCppVisitor
    • @@ -676,7 +682,7 @@

      - p -

        : nmodl::codegen::CodegenCppVisitor
      • process_variable() -: nmodl::visitor::DefUseAnalyzeVisitor +: nmodl::visitor::DefUseAnalyzeVisitor
      • process_verbatim_text() : nmodl::codegen::CodegenCoreneuronCppVisitor diff --git a/html/doxygen/functions_p.html b/html/doxygen/functions_p.html index ebec45d7a2..fcc55e7431 100644 --- a/html/doxygen/functions_p.html +++ b/html/doxygen/functions_p.html @@ -655,6 +655,9 @@

        - p -

        • print_num_variable_getter() : nmodl::codegen::CodegenCoreneuronCppVisitor
        • +
        • print_point_process_function_definitions() +: nmodl::codegen::CodegenNeuronCppVisitor +
        • print_prcellstate_macros() : nmodl::codegen::CodegenCppVisitor
        • @@ -675,6 +678,9 @@

          - p -

          • print_send_event_move() : nmodl::codegen::CodegenCoreneuronCppVisitor
          • +
          • print_setdata_functions() +: nmodl::codegen::CodegenNeuronCppVisitor +
          • print_setup_range_variable() : nmodl::codegen::CodegenCoreneuronCppVisitor
          • @@ -735,7 +741,7 @@

            - p -

              : nmodl::codegen::CodegenCppVisitor
            • ProcedureBlock() -: nmodl::ast::ProcedureBlock +: nmodl::ast::ProcedureBlock
            • procedures : nmodl::codegen::CodegenInfo @@ -750,7 +756,7 @@

              - p -

                : nmodl::codegen::CodegenCppVisitor
              • process_variable() -: nmodl::visitor::DefUseAnalyzeVisitor +: nmodl::visitor::DefUseAnalyzeVisitor
              • process_verbatim_text() : nmodl::codegen::CodegenCoreneuronCppVisitor @@ -761,7 +767,7 @@

                - p -

                  : nmodl::codegen::CodegenCoreneuronCppVisitor
                • Program() -: nmodl::ast::Program +: nmodl::ast::Program
                • program_symtab : nmodl::codegen::CodegenCppVisitor @@ -774,14 +780,14 @@

                  - p -

                    : nmodl::symtab::Symbol
                  • ProtectStatement() -: nmodl::ast::ProtectStatement +: nmodl::ast::ProtectStatement
                  • psymtab : nmodl::codegen::CodegenHelperVisitor , nmodl::visitor::FunctionCallpathVisitor
                  • push_block() -: nmodl::printer::CodePrinter +: nmodl::printer::CodePrinter , nmodl::printer::JSONPrinter
                  • push_current_directory() diff --git a/html/doxygen/functions_s.html b/html/doxygen/functions_s.html index 44007f898f..e2e64c1c06 100644 --- a/html/doxygen/functions_s.html +++ b/html/doxygen/functions_s.html @@ -110,6 +110,9 @@

                    - s -

                    • scope : nmodl::symtab::Symbol
                    • +
                    • semantic_variable_count +: nmodl::codegen::CodegenInfo +
                    • SemanticAnalysisVisitor() : nmodl::visitor::SemanticAnalysisVisitor
                    • @@ -147,7 +150,7 @@

                      - s -

                        : nmodl::ast::SolveBlock
                      • set_blocks() -: nmodl::ast::Include +: nmodl::ast::Include , nmodl::ast::Program
                      • set_byname() @@ -186,7 +189,7 @@

                        - s -

                          : nmodl::ast::IfStatement
                        • set_elses() -: nmodl::ast::IfStatement +: nmodl::ast::IfStatement
                        • set_expr() : nmodl::ast::Conserve @@ -257,7 +260,7 @@

                          - s -

                            : nmodl::ast::ParamAssign
                          • set_linxpression() -: nmodl::ast::LinEquation +: nmodl::ast::LinEquation
                          • set_macro() : nmodl::ast::Integer @@ -542,7 +545,7 @@

                            - s -

                            • set_statements() : nmodl::ast::ConstantBlock -, nmodl::ast::ParamBlock +, nmodl::ast::ParamBlock , nmodl::ast::StatementBlock , nmodl::ast::WatchStatement
                            • @@ -583,15 +586,15 @@

                              - s -

                                , nmodl::ast::UnitBlock
                              • set_table_vars() -: nmodl::ast::TableStatement +: nmodl::ast::TableStatement
                              • set_title() : nmodl::ast::Model
                              • set_to() -: nmodl::ast::AssignedDefinition +: nmodl::ast::AssignedDefinition , nmodl::ast::FromStatement -, nmodl::ast::TableStatement +, nmodl::ast::TableStatement
                              • set_token() : nmodl::ast::AfterBlock @@ -714,68 +717,68 @@

                                - s -

                                • set_type() : nmodl::ast::BABlock , nmodl::ast::Suffix -, nmodl::ast::Valence +, nmodl::ast::Valence
                                • set_unit() : nmodl::ast::Argument , nmodl::ast::AssignedDefinition , nmodl::ast::ConstantVar -, nmodl::ast::DoubleUnit -, nmodl::ast::FunctionBlock +, nmodl::ast::DoubleUnit +, nmodl::ast::FunctionBlock , nmodl::ast::FunctionTableBlock , nmodl::ast::ParamAssign -, nmodl::ast::ProcedureBlock +, nmodl::ast::ProcedureBlock
                                • set_unit1() -: nmodl::ast::FactorDef -, nmodl::ast::UnitDef +: nmodl::ast::FactorDef +, nmodl::ast::UnitDef
                                • set_unit2() : nmodl::ast::FactorDef -, nmodl::ast::UnitDef +, nmodl::ast::UnitDef
                                • set_update_states_block() : nmodl::ast::EigenLinearSolverBlock -, nmodl::ast::EigenNewtonSolverBlock +, nmodl::ast::EigenNewtonSolverBlock
                                • set_valence() -: nmodl::ast::Useion +: nmodl::ast::Useion
                                • set_value() : nmodl::ast::BABlockType , nmodl::ast::BinaryOperator , nmodl::ast::Boolean -, nmodl::ast::ConstantVar +, nmodl::ast::ConstantVar , nmodl::ast::Define , nmodl::ast::Double -, nmodl::ast::DoubleUnit -, nmodl::ast::FactorDef +, nmodl::ast::DoubleUnit +, nmodl::ast::FactorDef , nmodl::ast::Float , nmodl::ast::Integer -, nmodl::ast::Name -, nmodl::ast::ParamAssign +, nmodl::ast::Name +, nmodl::ast::ParamAssign , nmodl::ast::PrimeName , nmodl::ast::ReactionOperator , nmodl::ast::ReactVarName , nmodl::ast::String , nmodl::ast::UnaryOperator , nmodl::ast::UnitState -, nmodl::ast::UpdateDt -, nmodl::ast::Valence -, nmodl::ast::Watch +, nmodl::ast::UpdateDt +, nmodl::ast::Valence +, nmodl::ast::Watch , nmodl::symtab::Symbol
                                • set_variable_block() -: nmodl::ast::EigenLinearSolverBlock -, nmodl::ast::EigenNewtonSolverBlock +: nmodl::ast::EigenLinearSolverBlock +, nmodl::ast::EigenNewtonSolverBlock
                                • set_variables() -: nmodl::ast::BbcorePointer -, nmodl::ast::External -, nmodl::ast::Global -, nmodl::ast::IndependentBlock +: nmodl::ast::BbcorePointer +, nmodl::ast::External +, nmodl::ast::Global +, nmodl::ast::IndependentBlock , nmodl::ast::LocalListStatement -, nmodl::ast::Pointer +, nmodl::ast::Pointer , nmodl::ast::RandomVarList , nmodl::ast::Range
                                • @@ -785,10 +788,10 @@

                                  - s -

                                    , nmodl::parser::UnitDriver
                                  • set_with() -: nmodl::ast::TableStatement +: nmodl::ast::TableStatement
                                  • set_writelist() -: nmodl::ast::Useion +: nmodl::ast::Useion
                                  • setup() : nmodl::codegen::CodegenCppVisitor @@ -821,7 +824,7 @@

                                    - s -

                                      , nmodl::codegen::CodegenNeuronCppVisitor
                                    • SingletonRandomString() -: nmodl::utils::SingletonRandomString< SIZE > +: nmodl::utils::SingletonRandomString< SIZE >
                                    • size : nmodl::codegen::IndexSemantics @@ -842,7 +845,7 @@

                                      - s -

                                        : nmodl::visitor::SympyReplaceSolutionsVisitor
                                      • SolutionExpression() -: nmodl::ast::SolutionExpression +: nmodl::ast::SolutionExpression
                                      • solutions : nmodl::pybind_wrappers::SolveLinearSystemExecutor @@ -967,13 +970,13 @@

                                        - s -

                                          : nmodl::codegen::CodegenCppVisitor
                                        • StatementBlock() -: nmodl::ast::StatementBlock +: nmodl::ast::StatementBlock
                                        • statementblock_stack : nmodl::visitor::InlineVisitor
                                        • StatementDispenser() -: nmodl::visitor::SympyReplaceSolutionsVisitor::StatementDispenser +: nmodl::visitor::SympyReplaceSolutionsVisitor::StatementDispenser
                                        • statements : nmodl::ast::ConstantBlock @@ -1026,13 +1029,13 @@

                                          - s -

                                            : nmodl::details::MethodInfo
                                          • Suffix() -: nmodl::ast::Suffix +: nmodl::ast::Suffix
                                          • symbol : nmodl::codegen::IndexVariableInfo
                                          • Symbol() -: nmodl::symtab::Symbol +: nmodl::symtab::Symbol
                                          • symbol_count() : nmodl::symtab::SymbolTable @@ -1108,7 +1111,7 @@

                                            - s -

                                            diff --git a/html/doxygen/functions_vars_s.html b/html/doxygen/functions_vars_s.html index e64100b21d..7bfc63701a 100644 --- a/html/doxygen/functions_vars_s.html +++ b/html/doxygen/functions_vars_s.html @@ -104,6 +104,9 @@

                                            - s -

                                            • scope : nmodl::symtab::Symbol
                                            • +
                                            • semantic_variable_count +: nmodl::codegen::CodegenInfo +
                                            • semantics : nmodl::codegen::CodegenInfo
                                            • diff --git a/html/doxygen/globals_func.html b/html/doxygen/globals_func.html index c8e16dacb9..00d681c928 100644 --- a/html/doxygen/globals_func.html +++ b/html/doxygen/globals_func.html @@ -208,6 +208,9 @@

                                              - p -

                                                - r -

                                                  +
                                                • reindent_and_trim_text() +: codegen_neuron_cpp_visitor.cpp +
                                                • run_after_cvode_to_cnexp_visitor() : after_cvode_to_cnexp.cpp
                                                • diff --git a/html/doxygen/globals_r.html b/html/doxygen/globals_r.html index 4b8097d440..8d7a91714d 100644 --- a/html/doxygen/globals_r.html +++ b/html/doxygen/globals_r.html @@ -93,6 +93,9 @@
                                                  Here is a list of all file members with links to the files they belong to:

                                                  - r -

                                                    +
                                                  • reindent_and_trim_text() +: codegen_neuron_cpp_visitor.cpp +
                                                  • run_after_cvode_to_cnexp_visitor() : after_cvode_to_cnexp.cpp
                                                  • diff --git a/html/doxygen/group__codegen__backends.html b/html/doxygen/group__codegen__backends.html index e155d387ff..793ccd9451 100644 --- a/html/doxygen/group__codegen__backends.html +++ b/html/doxygen/group__codegen__backends.html @@ -191,7 +191,7 @@

                                                    Definition at line 656 of file codegen_neuron_cpp_visitor.hpp.

                                                    +

                                                    Definition at line 670 of file codegen_neuron_cpp_visitor.hpp.

                                                    diff --git a/html/doxygen/group__codegen__backends.js b/html/doxygen/group__codegen__backends.js index 8e4513d47c..ccd2581ada 100644 --- a/html/doxygen/group__codegen__backends.js +++ b/html/doxygen/group__codegen__backends.js @@ -412,8 +412,10 @@ var group__codegen__backends = [ "print_nrn_init", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#ad4ac4cce1ce357ab264dde505128f5e5", null ], [ "print_nrn_jacob", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#acc60913cbeb34f75a125224f6a3a79bd", null ], [ "print_nrn_state", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#a24c55a8420d179cbbd7bc6968f3c12e3", null ], + [ "print_point_process_function_definitions", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#aba63d80e4b1b15280a92ea120bc6160c", null ], [ "print_procedure", "classnmodl_1_1codegen_1_1_codegen_neuron_cpp_visitor.html#ab5ead6dc1ad6f664019b6713d3238622", null ], [ "print_sdlists_init", 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b/html/doxygen/src_2codegen_2codegen__neuron__cpp__visitor_8cpp_source.html @@ -191,1122 +191,1340 @@
                                                    95 /* Printing routines for code generation */
                                                    96 /****************************************************************************************/
                                                    97 
                                                    -
                                                    98 
                                                    -
                                                    99 /// TODO: Edit for NEURON
                                                    - -
                                                    101  if (info.functions.empty() && info.procedures.empty()) {
                                                    -
                                                    102  return;
                                                    -
                                                    103  }
                                                    -
                                                    104 }
                                                    -
                                                    105 
                                                    -
                                                    106 
                                                    -
                                                    107 /// TODO: Edit for NEURON
                                                    - -
                                                    109  const std::string& name) {
                                                    -
                                                    110  return;
                                                    -
                                                    111 }
                                                    -
                                                    112 
                                                    -
                                                    113 
                                                    -
                                                    114 /// TODO: Edit for NEURON
                                                    - -
                                                    116  return;
                                                    -
                                                    117 }
                                                    -
                                                    118 
                                                    -
                                                    119 
                                                    -
                                                    120 /// TODO: Edit for NEURON
                                                    - -
                                                    122  return;
                                                    -
                                                    123 }
                                                    -
                                                    124 
                                                    -
                                                    125 
                                                    -
                                                    126 /// TODO: Edit for NEURON
                                                    - -
                                                    128  return;
                                                    -
                                                    129 }
                                                    -
                                                    130 
                                                    -
                                                    131 
                                                    -
                                                    132 /****************************************************************************************/
                                                    -
                                                    133 /* Code-specific helper routines */
                                                    -
                                                    134 /****************************************************************************************/
                                                    -
                                                    135 
                                                    -
                                                    136 
                                                    -
                                                    137 /// TODO: Edit for NEURON
                                                    - -
                                                    139  return {};
                                                    -
                                                    140 }
                                                    -
                                                    141 
                                                    -
                                                    142 
                                                    -
                                                    143 /// TODO: Edit for NEURON
                                                    - -
                                                    145  return {};
                                                    -
                                                    146 }
                                                    -
                                                    147 
                                                    -
                                                    148 
                                                    -
                                                    149 /// TODO: Edit for NEURON
                                                    - -
                                                    151  return {};
                                                    -
                                                    152 }
                                                    -
                                                    153 
                                                    -
                                                    154 
                                                    -
                                                    155 /// TODO: Edit for NEURON
                                                    -
                                                    156 const char* CodegenNeuronCppVisitor::external_method_parameters(bool table) noexcept {
                                                    -
                                                    157  return {};
                                                    -
                                                    158 }
                                                    -
                                                    159 
                                                    -
                                                    160 
                                                    -
                                                    161 /// TODO: Edit for NEURON
                                                    - -
                                                    163  return {};
                                                    -
                                                    164 }
                                                    -
                                                    165 
                                                    -
                                                    166 
                                                    -
                                                    167 /// TODO: Edit for NEURON
                                                    - -
                                                    169  return {};
                                                    -
                                                    170 }
                                                    -
                                                    171 
                                                    -
                                                    172 
                                                    -
                                                    173 /// TODO: Write for NEURON
                                                    -
                                                    174 std::string CodegenNeuronCppVisitor::process_verbatim_text(std::string const& text) {
                                                    -
                                                    175  return {};
                                                    -
                                                    176 }
                                                    -
                                                    177 
                                                    -
                                                    178 
                                                    -
                                                    179 /// TODO: Write for NEURON
                                                    - -
                                                    181  return {};
                                                    -
                                                    182 };
                                                    -
                                                    183 
                                                    -
                                                    184 
                                                    -
                                                    185 /****************************************************************************************/
                                                    -
                                                    186 /* Code-specific printing routines for code generation */
                                                    -
                                                    187 /****************************************************************************************/
                                                    -
                                                    188 
                                                    -
                                                    189 
                                                    - -
                                                    191  printer->add_newline(2);
                                                    -
                                                    192  printer->push_block("namespace neuron");
                                                    -
                                                    193 }
                                                    -
                                                    194 
                                                    -
                                                    195 
                                                    - -
                                                    197  printer->pop_block();
                                                    -
                                                    198 }
                                                    -
                                                    199 
                                                    +
                                                    98 
                                                    + +
                                                    100  if (info.point_process) {
                                                    +
                                                    101  printer->add_line("/* Point Process specific functions */");
                                                    +
                                                    102  printer->add_multi_line(R"CODE(
                                                    +
                                                    103  static void* _hoc_create_pnt(Object* _ho) {
                                                    +
                                                    104  return create_point_process(_pointtype, _ho);
                                                    +
                                                    105  }
                                                    +
                                                    106  )CODE");
                                                    +
                                                    107  printer->push_block("static void _hoc_destroy_pnt(void* _vptr)");
                                                    +
                                                    108  if (info.is_watch_used() || info.for_netcon_used) {
                                                    +
                                                    109  printer->add_line("Prop* _prop = ((Point_process*)_vptr)->prop;");
                                                    +
                                                    110  }
                                                    +
                                                    111  if (info.is_watch_used()) {
                                                    +
                                                    112  printer->push_block("if (_prop)");
                                                    +
                                                    113  printer->fmt_line("_nrn_free_watch(_nrn_mechanism_access_dparam(_prop), {}, {});",
                                                    +
                                                    114  info.watch_count,
                                                    +
                                                    115  info.is_watch_used());
                                                    +
                                                    116  printer->pop_block();
                                                    +
                                                    117  }
                                                    +
                                                    118  if (info.for_netcon_used) {
                                                    +
                                                    119  printer->push_block("if (_prop)");
                                                    +
                                                    120  printer->fmt_line(
                                                    +
                                                    121  "_nrn_free_fornetcon(&(_nrn_mechanism_access_dparam(_prop)[_fnc_index].literal_"
                                                    +
                                                    122  "value<void*>()));");
                                                    +
                                                    123  printer->pop_block();
                                                    +
                                                    124  }
                                                    +
                                                    125  printer->add_line("destroy_point_process(_vptr);");
                                                    +
                                                    126  printer->pop_block();
                                                    +
                                                    127  printer->add_multi_line(R"CODE(
                                                    +
                                                    128  static double _hoc_loc_pnt(void* _vptr) {
                                                    +
                                                    129  return loc_point_process(_pointtype, _vptr);
                                                    +
                                                    130  }
                                                    +
                                                    131  )CODE");
                                                    +
                                                    132  printer->add_multi_line(R"CODE(
                                                    +
                                                    133  static double _hoc_has_loc(void* _vptr) {
                                                    +
                                                    134  return has_loc_point(_vptr);
                                                    +
                                                    135  }
                                                    +
                                                    136  )CODE");
                                                    +
                                                    137  printer->add_multi_line(R"CODE(
                                                    +
                                                    138  static double _hoc_get_loc_pnt(void* _vptr) {
                                                    +
                                                    139  return (get_loc_point_process(_vptr));
                                                    +
                                                    140  }
                                                    +
                                                    141  )CODE");
                                                    +
                                                    142  }
                                                    +
                                                    143 }
                                                    +
                                                    144 
                                                    +
                                                    145 
                                                    + +
                                                    147  printer->add_line("/* Neuron setdata functions */");
                                                    +
                                                    148  printer->add_line("extern void _nrn_setdata_reg(int, void(*)(Prop*));");
                                                    +
                                                    149  printer->push_block("static void _setdata(Prop* _prop)");
                                                    +
                                                    150  if (!info.point_process) {
                                                    +
                                                    151  printer->add_multi_line(R"CODE(
                                                    +
                                                    152  _extcall_prop = _prop;
                                                    +
                                                    153  _prop_id = _nrn_get_prop_id(_prop);
                                                    +
                                                    154  )CODE");
                                                    +
                                                    155  }
                                                    +
                                                    156  if (!info.vectorize) {
                                                    +
                                                    157  printer->add_multi_line(R"CODE(
                                                    +
                                                    158  neuron::legacy::set_globals_from_prop(_prop, _ml_real, _ml, _iml);
                                                    +
                                                    159  _ppvar = _nrn_mechanism_access_dparam(_prop);
                                                    +
                                                    160  )CODE");
                                                    +
                                                    161  }
                                                    +
                                                    162  printer->pop_block();
                                                    +
                                                    163 
                                                    +
                                                    164  if (info.point_process) {
                                                    +
                                                    165  printer->push_block("static void _hoc_setdata(void* _vptr)");
                                                    +
                                                    166  printer->add_multi_line(R"CODE(
                                                    +
                                                    167  Prop* _prop;
                                                    +
                                                    168  _prop = ((Point_process*)_vptr)->prop;
                                                    +
                                                    169  _setdata(_prop);
                                                    +
                                                    170  )CODE");
                                                    +
                                                    171  } else {
                                                    +
                                                    172  printer->push_block("static void _hoc_setdata()");
                                                    +
                                                    173  printer->add_multi_line(R"CODE(
                                                    +
                                                    174  Prop *_prop, *hoc_getdata_range(int);
                                                    +
                                                    175  _prop = hoc_getdata_range(mech_type);
                                                    +
                                                    176  _setdata(_prop);
                                                    +
                                                    177  hoc_retpushx(1.);
                                                    +
                                                    178  )CODE");
                                                    +
                                                    179  }
                                                    +
                                                    180  printer->pop_block();
                                                    +
                                                    181 }
                                                    +
                                                    182 
                                                    +
                                                    183 
                                                    +
                                                    184 /// TODO: Edit for NEURON
                                                    + +
                                                    186  printer->add_newline(2);
                                                    +
                                                    187 
                                                    +
                                                    188  print_point_process_function_definitions();
                                                    +
                                                    189  print_setdata_functions();
                                                    +
                                                    190 
                                                    +
                                                    191  /// TODO: Add mechanism function and procedures declarations
                                                    +
                                                    192 }
                                                    +
                                                    193 
                                                    +
                                                    194 
                                                    +
                                                    195 /// TODO: Edit for NEURON
                                                    + +
                                                    197  const std::string& name) {
                                                    +
                                                    198  return;
                                                    +
                                                    199 }
                                                    200 
                                                    -
                                                    201 std::string CodegenNeuronCppVisitor::conc_write_statement(const std::string& ion_name,
                                                    -
                                                    202  const std::string& concentration,
                                                    -
                                                    203  int index) {
                                                    -
                                                    204  // throw std::runtime_error("Not implemented.");
                                                    -
                                                    205  return "";
                                                    -
                                                    206 }
                                                    -
                                                    207 
                                                    -
                                                    208 /****************************************************************************************/
                                                    -
                                                    209 /* Routines for returning variable name */
                                                    -
                                                    210 /****************************************************************************************/
                                                    -
                                                    211 
                                                    -
                                                    212 
                                                    -
                                                    213 /// TODO: Edit for NEURON
                                                    - -
                                                    215  bool use_instance) const {
                                                    -
                                                    216  auto name = symbol->get_name();
                                                    -
                                                    217  auto dimension = symbol->get_length();
                                                    -
                                                    218  // auto position = position_of_float_var(name);
                                                    -
                                                    219  if (symbol->is_array()) {
                                                    -
                                                    220  if (use_instance) {
                                                    -
                                                    221  return fmt::format("(inst.{}+id*{})", name, dimension);
                                                    -
                                                    222  }
                                                    -
                                                    223  throw std::runtime_error("Printing non-instance variables is not implemented.");
                                                    -
                                                    224  // return fmt::format("(data + {}*pnodecount + id*{})", position, dimension);
                                                    -
                                                    225  }
                                                    -
                                                    226  if (use_instance) {
                                                    -
                                                    227  return fmt::format("inst.{}[id]", name);
                                                    -
                                                    228  }
                                                    -
                                                    229  throw std::runtime_error("Not implemented.");
                                                    -
                                                    230  // return fmt::format("data[{}*pnodecount + id]", position);
                                                    -
                                                    231 }
                                                    -
                                                    232 
                                                    -
                                                    233 
                                                    -
                                                    234 /// TODO: Edit for NEURON
                                                    - -
                                                    236  const std::string& name,
                                                    -
                                                    237  bool use_instance) const {
                                                    -
                                                    238  auto position = position_of_int_var(name);
                                                    -
                                                    239  if (symbol.is_index) {
                                                    -
                                                    240  if (use_instance) {
                                                    -
                                                    241  throw std::runtime_error("Not implemented. [wiejo]");
                                                    -
                                                    242  // return fmt::format("inst->{}[{}]", name, position);
                                                    -
                                                    243  }
                                                    -
                                                    244  throw std::runtime_error("Not implemented. [ncuwi]");
                                                    -
                                                    245  // return fmt::format("indexes[{}]", position);
                                                    -
                                                    246  }
                                                    -
                                                    247  if (symbol.is_integer) {
                                                    -
                                                    248  if (use_instance) {
                                                    -
                                                    249  throw std::runtime_error("Not implemented. [cnuoe]");
                                                    -
                                                    250  // return fmt::format("inst->{}[{}*pnodecount+id]", name, position);
                                                    -
                                                    251  }
                                                    -
                                                    252  throw std::runtime_error("Not implemented. [u32ow]");
                                                    -
                                                    253  // return fmt::format("indexes[{}*pnodecount+id]", position);
                                                    -
                                                    254  }
                                                    -
                                                    255  if (use_instance) {
                                                    -
                                                    256  return fmt::format("(*inst.{}[id])", name);
                                                    -
                                                    257  }
                                                    -
                                                    258 
                                                    -
                                                    259  throw std::runtime_error("Not implemented. [nvueir]");
                                                    -
                                                    260  // auto data = symbol.is_vdata ? "_vdata" : "_data";
                                                    -
                                                    261  // return fmt::format("nt->{}[indexes[{}*pnodecount + id]]", data, position);
                                                    -
                                                    262 }
                                                    -
                                                    263 
                                                    -
                                                    264 
                                                    - -
                                                    266  bool use_instance) const {
                                                    -
                                                    267  if (use_instance) {
                                                    -
                                                    268  return fmt::format("inst.{}->{}", naming::INST_GLOBAL_MEMBER, symbol->get_name());
                                                    -
                                                    269  } else {
                                                    -
                                                    270  return fmt::format("{}.{}", global_struct_instance(), symbol->get_name());
                                                    -
                                                    271  }
                                                    -
                                                    272 }
                                                    -
                                                    273 
                                                    -
                                                    274 
                                                    -
                                                    275 std::string CodegenNeuronCppVisitor::get_variable_name(const std::string& name,
                                                    -
                                                    276  bool use_instance) const {
                                                    -
                                                    277  const std::string& varname = update_if_ion_variable_name(name);
                                                    -
                                                    278 
                                                    -
                                                    279  auto symbol_comparator = [&varname](const SymbolType& sym) {
                                                    -
                                                    280  return varname == sym->get_name();
                                                    -
                                                    281  };
                                                    +
                                                    201 
                                                    +
                                                    202 /// TODO: Edit for NEURON
                                                    + +
                                                    204  return;
                                                    +
                                                    205 }
                                                    +
                                                    206 
                                                    +
                                                    207 
                                                    +
                                                    208 /// TODO: Edit for NEURON
                                                    + +
                                                    210  return;
                                                    +
                                                    211 }
                                                    +
                                                    212 
                                                    +
                                                    213 
                                                    +
                                                    214 /// TODO: Edit for NEURON
                                                    + +
                                                    216  return;
                                                    +
                                                    217 }
                                                    +
                                                    218 
                                                    +
                                                    219 
                                                    +
                                                    220 /****************************************************************************************/
                                                    +
                                                    221 /* Code-specific helper routines */
                                                    +
                                                    222 /****************************************************************************************/
                                                    +
                                                    223 
                                                    +
                                                    224 
                                                    +
                                                    225 /// TODO: Edit for NEURON
                                                    + +
                                                    227  return {};
                                                    +
                                                    228 }
                                                    +
                                                    229 
                                                    +
                                                    230 
                                                    +
                                                    231 /// TODO: Edit for NEURON
                                                    + +
                                                    233  return {};
                                                    +
                                                    234 }
                                                    +
                                                    235 
                                                    +
                                                    236 
                                                    +
                                                    237 /// TODO: Edit for NEURON
                                                    + +
                                                    239  return {};
                                                    +
                                                    240 }
                                                    +
                                                    241 
                                                    +
                                                    242 
                                                    +
                                                    243 /// TODO: Edit for NEURON
                                                    +
                                                    244 const char* CodegenNeuronCppVisitor::external_method_parameters(bool table) noexcept {
                                                    +
                                                    245  return {};
                                                    +
                                                    246 }
                                                    +
                                                    247 
                                                    +
                                                    248 
                                                    +
                                                    249 /// TODO: Edit for NEURON
                                                    + +
                                                    251  return {};
                                                    +
                                                    252 }
                                                    +
                                                    253 
                                                    +
                                                    254 
                                                    +
                                                    255 /// TODO: Edit for NEURON
                                                    + +
                                                    257  return {};
                                                    +
                                                    258 }
                                                    +
                                                    259 
                                                    +
                                                    260 
                                                    +
                                                    261 /// TODO: Write for NEURON
                                                    +
                                                    262 std::string CodegenNeuronCppVisitor::process_verbatim_text(std::string const& text) {
                                                    +
                                                    263  return {};
                                                    +
                                                    264 }
                                                    +
                                                    265 
                                                    +
                                                    266 
                                                    +
                                                    267 /// TODO: Write for NEURON
                                                    + +
                                                    269  return {};
                                                    +
                                                    270 };
                                                    +
                                                    271 
                                                    +
                                                    272 
                                                    +
                                                    273 /****************************************************************************************/
                                                    +
                                                    274 /* Code-specific printing routines for code generation */
                                                    +
                                                    275 /****************************************************************************************/
                                                    +
                                                    276 
                                                    +
                                                    277 
                                                    + +
                                                    279  printer->add_newline(2);
                                                    +
                                                    280  printer->push_block("namespace neuron");
                                                    +
                                                    281 }
                                                    282 
                                                    -
                                                    283  auto index_comparator = [&varname](const IndexVariableInfo& var) {
                                                    -
                                                    284  return varname == var.symbol->get_name();
                                                    -
                                                    285  };
                                                    -
                                                    286 
                                                    -
                                                    287  // float variable
                                                    -
                                                    288  auto f = std::find_if(codegen_float_variables.begin(),
                                                    -
                                                    289  codegen_float_variables.end(),
                                                    -
                                                    290  symbol_comparator);
                                                    -
                                                    291  if (f != codegen_float_variables.end()) {
                                                    -
                                                    292  return float_variable_name(*f, use_instance);
                                                    -
                                                    293  }
                                                    -
                                                    294 
                                                    -
                                                    295  // integer variable
                                                    -
                                                    296  auto i =
                                                    -
                                                    297  std::find_if(codegen_int_variables.begin(), codegen_int_variables.end(), index_comparator);
                                                    -
                                                    298  if (i != codegen_int_variables.end()) {
                                                    -
                                                    299  return int_variable_name(*i, varname, use_instance);
                                                    -
                                                    300  }
                                                    -
                                                    301 
                                                    -
                                                    302  // global variable
                                                    -
                                                    303  auto g = std::find_if(codegen_global_variables.begin(),
                                                    -
                                                    304  codegen_global_variables.end(),
                                                    -
                                                    305  symbol_comparator);
                                                    -
                                                    306  if (g != codegen_global_variables.end()) {
                                                    -
                                                    307  return global_variable_name(*g, use_instance);
                                                    -
                                                    308  }
                                                    -
                                                    309 
                                                    -
                                                    310  if (varname == naming::NTHREAD_DT_VARIABLE) {
                                                    -
                                                    311  return std::string("_nt->_") + naming::NTHREAD_DT_VARIABLE;
                                                    -
                                                    312  }
                                                    -
                                                    313 
                                                    -
                                                    314  // t in net_receive method is an argument to function and hence it should
                                                    -
                                                    315  // be used instead of nt->_t which is current time of thread
                                                    -
                                                    316  if (varname == naming::NTHREAD_T_VARIABLE && !printing_net_receive) {
                                                    -
                                                    317  return std::string("_nt->_") + naming::NTHREAD_T_VARIABLE;
                                                    -
                                                    318  }
                                                    -
                                                    319 
                                                    -
                                                    320  auto const iter =
                                                    -
                                                    321  std::find_if(info.neuron_global_variables.begin(),
                                                    -
                                                    322  info.neuron_global_variables.end(),
                                                    -
                                                    323  [&varname](auto const& entry) { return entry.first->get_name() == varname; });
                                                    -
                                                    324  if (iter != info.neuron_global_variables.end()) {
                                                    -
                                                    325  std::string ret;
                                                    -
                                                    326  if (use_instance) {
                                                    -
                                                    327  ret = "*(inst->";
                                                    -
                                                    328  }
                                                    -
                                                    329  ret.append(varname);
                                                    -
                                                    330  if (use_instance) {
                                                    -
                                                    331  ret.append(")");
                                                    -
                                                    332  }
                                                    -
                                                    333  return ret;
                                                    +
                                                    283 
                                                    + +
                                                    285  printer->pop_block();
                                                    +
                                                    286 }
                                                    +
                                                    287 
                                                    +
                                                    288 
                                                    +
                                                    289 std::string CodegenNeuronCppVisitor::conc_write_statement(const std::string& ion_name,
                                                    +
                                                    290  const std::string& concentration,
                                                    +
                                                    291  int index) {
                                                    +
                                                    292  // throw std::runtime_error("Not implemented.");
                                                    +
                                                    293  return "";
                                                    +
                                                    294 }
                                                    +
                                                    295 
                                                    +
                                                    296 /****************************************************************************************/
                                                    +
                                                    297 /* Routines for returning variable name */
                                                    +
                                                    298 /****************************************************************************************/
                                                    +
                                                    299 
                                                    +
                                                    300 
                                                    +
                                                    301 /// TODO: Edit for NEURON
                                                    + +
                                                    303  bool use_instance) const {
                                                    +
                                                    304  auto name = symbol->get_name();
                                                    +
                                                    305  auto dimension = symbol->get_length();
                                                    +
                                                    306  // auto position = position_of_float_var(name);
                                                    +
                                                    307  if (symbol->is_array()) {
                                                    +
                                                    308  if (use_instance) {
                                                    +
                                                    309  return fmt::format("(inst.{}+id*{})", name, dimension);
                                                    +
                                                    310  }
                                                    +
                                                    311  throw std::runtime_error("Printing non-instance variables is not implemented.");
                                                    +
                                                    312  // return fmt::format("(data + {}*pnodecount + id*{})", position, dimension);
                                                    +
                                                    313  }
                                                    +
                                                    314  if (use_instance) {
                                                    +
                                                    315  return fmt::format("inst.{}[id]", name);
                                                    +
                                                    316  }
                                                    +
                                                    317  throw std::runtime_error("Not implemented.");
                                                    +
                                                    318  // return fmt::format("data[{}*pnodecount + id]", position);
                                                    +
                                                    319 }
                                                    +
                                                    320 
                                                    +
                                                    321 
                                                    +
                                                    322 /// TODO: Edit for NEURON
                                                    + +
                                                    324  const std::string& name,
                                                    +
                                                    325  bool use_instance) const {
                                                    +
                                                    326  auto position = position_of_int_var(name);
                                                    +
                                                    327  if (symbol.is_index) {
                                                    +
                                                    328  if (use_instance) {
                                                    +
                                                    329  throw std::runtime_error("Not implemented. [wiejo]");
                                                    +
                                                    330  // return fmt::format("inst->{}[{}]", name, position);
                                                    +
                                                    331  }
                                                    +
                                                    332  throw std::runtime_error("Not implemented. [ncuwi]");
                                                    +
                                                    333  // return fmt::format("indexes[{}]", position);
                                                    334  }
                                                    -
                                                    335 
                                                    -
                                                    336  // otherwise return original name
                                                    -
                                                    337  return varname;
                                                    -
                                                    338 }
                                                    -
                                                    339 
                                                    -
                                                    340 
                                                    -
                                                    341 /****************************************************************************************/
                                                    -
                                                    342 /* Main printing routines for code generation */
                                                    -
                                                    343 /****************************************************************************************/
                                                    -
                                                    344 
                                                    -
                                                    345 
                                                    - -
                                                    347  time_t current_time{};
                                                    -
                                                    348  time(&current_time);
                                                    -
                                                    349  std::string data_time_str{std::ctime(&current_time)};
                                                    -
                                                    350  auto version = nmodl::Version::NMODL_VERSION + " [" + nmodl::Version::GIT_REVISION + "]";
                                                    +
                                                    335  if (symbol.is_integer) {
                                                    +
                                                    336  if (use_instance) {
                                                    +
                                                    337  throw std::runtime_error("Not implemented. [cnuoe]");
                                                    +
                                                    338  // return fmt::format("inst->{}[{}*pnodecount+id]", name, position);
                                                    +
                                                    339  }
                                                    +
                                                    340  throw std::runtime_error("Not implemented. [u32ow]");
                                                    +
                                                    341  // return fmt::format("indexes[{}*pnodecount+id]", position);
                                                    +
                                                    342  }
                                                    +
                                                    343  if (use_instance) {
                                                    +
                                                    344  return fmt::format("(*inst.{}[id])", name);
                                                    +
                                                    345  }
                                                    +
                                                    346 
                                                    +
                                                    347  throw std::runtime_error("Not implemented. [nvueir]");
                                                    +
                                                    348  // auto data = symbol.is_vdata ? "_vdata" : "_data";
                                                    +
                                                    349  // return fmt::format("nt->{}[indexes[{}*pnodecount + id]]", data, position);
                                                    +
                                                    350 }
                                                    351 
                                                    -
                                                    352  printer->add_line("/*********************************************************");
                                                    -
                                                    353  printer->add_line("Model Name : ", info.mod_suffix);
                                                    -
                                                    354  printer->add_line("Filename : ", info.mod_file, ".mod");
                                                    -
                                                    355  printer->add_line("NMODL Version : ", nmodl_version());
                                                    -
                                                    356  printer->fmt_line("Vectorized : {}", info.vectorize);
                                                    -
                                                    357  printer->fmt_line("Threadsafe : {}", info.thread_safe);
                                                    -
                                                    358  printer->add_line("Created : ", stringutils::trim(data_time_str));
                                                    -
                                                    359  printer->add_line("Simulator : ", simulator_name());
                                                    -
                                                    360  printer->add_line("Backend : ", backend_name());
                                                    -
                                                    361  printer->add_line("NMODL Compiler : ", version);
                                                    -
                                                    362  printer->add_line("*********************************************************/");
                                                    -
                                                    363 }
                                                    -
                                                    364 
                                                    -
                                                    365 
                                                    - -
                                                    367  printer->add_newline();
                                                    -
                                                    368  printer->add_multi_line(R"CODE(
                                                    -
                                                    369  #include <math.h>
                                                    -
                                                    370  #include <stdio.h>
                                                    -
                                                    371  #include <stdlib.h>
                                                    -
                                                    372  )CODE");
                                                    -
                                                    373  if (!info.vectorize) {
                                                    -
                                                    374  printer->add_line("#include <vector>");
                                                    -
                                                    375  }
                                                    -
                                                    376 }
                                                    -
                                                    377 
                                                    -
                                                    378 
                                                    - -
                                                    380  printer->add_newline();
                                                    -
                                                    381  printer->add_multi_line(R"CODE(
                                                    -
                                                    382  #include "mech_api.h"
                                                    -
                                                    383  #include "neuron/cache/mechanism_range.hpp"
                                                    -
                                                    384  #include "nrniv_mf.h"
                                                    -
                                                    385  #include "section_fwd.hpp"
                                                    -
                                                    386  )CODE");
                                                    -
                                                    387 }
                                                    -
                                                    388 
                                                    -
                                                    389 
                                                    -
                                                    390 void CodegenNeuronCppVisitor::print_sdlists_init([[maybe_unused]] bool print_initializers) {
                                                    -
                                                    391  /// _initlists() should only be called once by the mechanism registration function
                                                    -
                                                    392  /// (_<mod_file>_reg())
                                                    -
                                                    393  printer->add_newline(2);
                                                    -
                                                    394  printer->push_block("static void _initlists()");
                                                    -
                                                    395  for (auto i = 0; i < info.prime_variables_by_order.size(); ++i) {
                                                    -
                                                    396  const auto& prime_var = info.prime_variables_by_order[i];
                                                    -
                                                    397  /// TODO: Something similar needs to happen for slist/dlist2 but I don't know their usage at
                                                    -
                                                    398  // the moment
                                                    -
                                                    399  /// TODO: We have to do checks and add errors similar to nocmodl in the
                                                    -
                                                    400  // SemanticAnalysisVisitor
                                                    -
                                                    401  if (prime_var->is_array()) {
                                                    -
                                                    402  /// TODO: Needs a for loop here. Look at
                                                    -
                                                    403  // https://github.com/neuronsimulator/nrn/blob/df001a436bcb4e23d698afe66c2a513819a6bfe8/src/nmodl/deriv.cpp#L524
                                                    -
                                                    404  /// TODO: Also needs a test
                                                    -
                                                    405  printer->fmt_push_block("for (int _i = 0; _i < {}; ++_i)", prime_var->get_length());
                                                    -
                                                    406  printer->fmt_line("/* {}[{}] */", prime_var->get_name(), prime_var->get_length());
                                                    -
                                                    407  printer->fmt_line("_slist1[{}+_i] = {{{}, _i}};",
                                                    -
                                                    408  i,
                                                    -
                                                    409  position_of_float_var(prime_var->get_name()));
                                                    -
                                                    410  const auto prime_var_deriv_name = "D" + prime_var->get_name();
                                                    -
                                                    411  printer->fmt_line("/* {}[{}] */", prime_var_deriv_name, prime_var->get_length());
                                                    -
                                                    412  printer->fmt_line("_dlist1[{}+_i] = {{{}, _i}};",
                                                    -
                                                    413  i,
                                                    -
                                                    414  position_of_float_var(prime_var_deriv_name));
                                                    -
                                                    415  printer->pop_block();
                                                    -
                                                    416  } else {
                                                    -
                                                    417  printer->fmt_line("/* {} */", prime_var->get_name());
                                                    -
                                                    418  printer->fmt_line("_slist1[{}] = {{{}, 0}};",
                                                    -
                                                    419  i,
                                                    -
                                                    420  position_of_float_var(prime_var->get_name()));
                                                    -
                                                    421  const auto prime_var_deriv_name = "D" + prime_var->get_name();
                                                    -
                                                    422  printer->fmt_line("/* {} */", prime_var_deriv_name);
                                                    -
                                                    423  printer->fmt_line("_dlist1[{}] = {{{}, 0}};",
                                                    -
                                                    424  i,
                                                    -
                                                    425  position_of_float_var(prime_var_deriv_name));
                                                    -
                                                    426  }
                                                    -
                                                    427  }
                                                    -
                                                    428  printer->pop_block();
                                                    -
                                                    429 }
                                                    -
                                                    430 
                                                    -
                                                    431 
                                                    - -
                                                    433  const auto value_initialize = print_initializers ? "{}" : "";
                                                    -
                                                    434 
                                                    -
                                                    435  /// TODO: Print only global variables printed in NEURON
                                                    -
                                                    436  printer->add_newline(2);
                                                    -
                                                    437  printer->add_line("/* NEURON global variables */");
                                                    -
                                                    438  if (info.primes_size != 0) {
                                                    -
                                                    439  printer->fmt_line("static neuron::container::field_index _slist1[{0}], _dlist1[{0}];",
                                                    -
                                                    440  info.primes_size);
                                                    -
                                                    441  }
                                                    -
                                                    442  printer->add_line("static int mech_type;");
                                                    -
                                                    443 
                                                    -
                                                    444  printer->fmt_line("static int {} = {};",
                                                    - -
                                                    446  info.pointer_variables.size() > 0
                                                    -
                                                    447  ? static_cast<int>(info.pointer_variables.size())
                                                    -
                                                    448  : -1);
                                                    -
                                                    449 
                                                    -
                                                    450  // Start printing the CNRN-style global variables.
                                                    -
                                                    451  auto float_type = default_float_data_type();
                                                    -
                                                    452  printer->add_newline(2);
                                                    -
                                                    453  printer->add_line("/** all global variables */");
                                                    -
                                                    454  printer->fmt_push_block("struct {}", global_struct());
                                                    -
                                                    455 
                                                    -
                                                    456  if (!info.ions.empty()) {
                                                    -
                                                    457  // TODO implement these when needed.
                                                    -
                                                    458  }
                                                    -
                                                    459 
                                                    -
                                                    460  if (info.point_process) {
                                                    -
                                                    461  throw std::runtime_error("Not implemented, global point process.");
                                                    -
                                                    462  }
                                                    -
                                                    463 
                                                    -
                                                    464  if (!info.vectorize && !info.top_local_variables.empty()) {
                                                    -
                                                    465  throw std::runtime_error("Not implemented, global vectorize something.");
                                                    -
                                                    466  }
                                                    -
                                                    467 
                                                    -
                                                    468  if (!info.thread_variables.empty()) {
                                                    -
                                                    469  throw std::runtime_error("Not implemented, global thread variables.");
                                                    -
                                                    470  }
                                                    -
                                                    471 
                                                    -
                                                    472  if (info.table_count > 0) {
                                                    -
                                                    473  throw std::runtime_error("Not implemented, global table count.");
                                                    -
                                                    474  }
                                                    -
                                                    475 
                                                    -
                                                    476  for (const auto& var: info.state_vars) {
                                                    -
                                                    477  auto name = var->get_name() + "0";
                                                    -
                                                    478  auto symbol = program_symtab->lookup(name);
                                                    -
                                                    479  if (symbol == nullptr) {
                                                    -
                                                    480  printer->fmt_line("{} {}{};", float_type, name, value_initialize);
                                                    -
                                                    481  codegen_global_variables.push_back(make_symbol(name));
                                                    -
                                                    482  }
                                                    -
                                                    483  }
                                                    -
                                                    484 
                                                    -
                                                    485  for (const auto& var: info.global_variables) {
                                                    -
                                                    486  auto name = var->get_name();
                                                    -
                                                    487  auto length = var->get_length();
                                                    -
                                                    488  if (var->is_array()) {
                                                    -
                                                    489  printer->fmt_line("{} {}[{}] /* TODO init const-array */;", float_type, name, length);
                                                    -
                                                    490  } else {
                                                    -
                                                    491  double value{};
                                                    -
                                                    492  if (auto const& value_ptr = var->get_value()) {
                                                    -
                                                    493  value = *value_ptr;
                                                    -
                                                    494  }
                                                    -
                                                    495  printer->fmt_line("{} {}{};",
                                                    -
                                                    496  float_type,
                                                    -
                                                    497  name,
                                                    -
                                                    498  print_initializers ? fmt::format("{{{:g}}}", value) : std::string{});
                                                    -
                                                    499  }
                                                    -
                                                    500  codegen_global_variables.push_back(var);
                                                    -
                                                    501  }
                                                    -
                                                    502 
                                                    -
                                                    503 
                                                    -
                                                    504  for (const auto& f: info.function_tables) {
                                                    -
                                                    505  throw std::runtime_error("Not implemented, global function tables.");
                                                    -
                                                    506  }
                                                    -
                                                    507 
                                                    -
                                                    508  if (info.vectorize && info.thread_data_index) {
                                                    -
                                                    509  throw std::runtime_error("Not implemented, global vectorize something else.");
                                                    -
                                                    510  }
                                                    -
                                                    511 
                                                    -
                                                    512  printer->pop_block(";");
                                                    -
                                                    513 
                                                    -
                                                    514  print_global_var_struct_assertions();
                                                    -
                                                    515  print_global_var_struct_decl();
                                                    -
                                                    516 }
                                                    -
                                                    517 
                                                    -
                                                    518 
                                                    -
                                                    519 /// TODO: Same as CoreNEURON?
                                                    - -
                                                    521  /// TODO: Write HocParmLimits and other HOC global variables (delta_t)
                                                    -
                                                    522  // Probably needs more changes
                                                    -
                                                    523  auto variable_printer =
                                                    -
                                                    524  [&](const std::vector<SymbolType>& variables, bool if_array, bool if_vector) {
                                                    -
                                                    525  for (const auto& variable: variables) {
                                                    -
                                                    526  if (variable->is_array() == if_array) {
                                                    -
                                                    527  // false => do not use the instance struct, which is not
                                                    -
                                                    528  // defined in the global declaration that we are printing
                                                    -
                                                    529  auto name = get_variable_name(variable->get_name(), false);
                                                    -
                                                    530  auto ename = add_escape_quote(variable->get_name() + "_" + info.mod_suffix);
                                                    -
                                                    531  auto length = variable->get_length();
                                                    -
                                                    532  if (if_vector) {
                                                    -
                                                    533  printer->fmt_line("{{{}, {}, {}}},", ename, name, length);
                                                    -
                                                    534  } else {
                                                    -
                                                    535  printer->fmt_line("{{{}, &{}}},", ename, name);
                                                    -
                                                    536  }
                                                    -
                                                    537  }
                                                    -
                                                    538  }
                                                    -
                                                    539  };
                                                    -
                                                    540 
                                                    -
                                                    541  auto globals = info.global_variables;
                                                    -
                                                    542  auto thread_vars = info.thread_variables;
                                                    -
                                                    543 
                                                    -
                                                    544  if (info.table_count > 0) {
                                                    -
                                                    545  globals.push_back(make_symbol(naming::USE_TABLE_VARIABLE));
                                                    -
                                                    546  }
                                                    -
                                                    547 
                                                    -
                                                    548  printer->add_newline(2);
                                                    -
                                                    549  printer->add_line("/** connect global (scalar) variables to hoc -- */");
                                                    -
                                                    550  printer->add_line("static DoubScal hoc_scalar_double[] = {");
                                                    -
                                                    551  printer->increase_indent();
                                                    -
                                                    552  variable_printer(globals, false, false);
                                                    -
                                                    553  variable_printer(thread_vars, false, false);
                                                    -
                                                    554  printer->add_line("{nullptr, nullptr}");
                                                    -
                                                    555  printer->decrease_indent();
                                                    -
                                                    556  printer->add_line("};");
                                                    +
                                                    352 
                                                    + +
                                                    354  bool use_instance) const {
                                                    +
                                                    355  if (use_instance) {
                                                    +
                                                    356  return fmt::format("inst.{}->{}", naming::INST_GLOBAL_MEMBER, symbol->get_name());
                                                    +
                                                    357  } else {
                                                    +
                                                    358  return fmt::format("{}.{}", global_struct_instance(), symbol->get_name());
                                                    +
                                                    359  }
                                                    +
                                                    360 }
                                                    +
                                                    361 
                                                    +
                                                    362 
                                                    +
                                                    363 std::string CodegenNeuronCppVisitor::get_variable_name(const std::string& name,
                                                    +
                                                    364  bool use_instance) const {
                                                    +
                                                    365  const std::string& varname = update_if_ion_variable_name(name);
                                                    +
                                                    366 
                                                    +
                                                    367  auto symbol_comparator = [&varname](const SymbolType& sym) {
                                                    +
                                                    368  return varname == sym->get_name();
                                                    +
                                                    369  };
                                                    +
                                                    370 
                                                    +
                                                    371  auto index_comparator = [&varname](const IndexVariableInfo& var) {
                                                    +
                                                    372  return varname == var.symbol->get_name();
                                                    +
                                                    373  };
                                                    +
                                                    374 
                                                    +
                                                    375  // float variable
                                                    +
                                                    376  auto f = std::find_if(codegen_float_variables.begin(),
                                                    +
                                                    377  codegen_float_variables.end(),
                                                    +
                                                    378  symbol_comparator);
                                                    +
                                                    379  if (f != codegen_float_variables.end()) {
                                                    +
                                                    380  return float_variable_name(*f, use_instance);
                                                    +
                                                    381  }
                                                    +
                                                    382 
                                                    +
                                                    383  // integer variable
                                                    +
                                                    384  auto i =
                                                    +
                                                    385  std::find_if(codegen_int_variables.begin(), codegen_int_variables.end(), index_comparator);
                                                    +
                                                    386  if (i != codegen_int_variables.end()) {
                                                    +
                                                    387  return int_variable_name(*i, varname, use_instance);
                                                    +
                                                    388  }
                                                    +
                                                    389 
                                                    +
                                                    390  // global variable
                                                    +
                                                    391  auto g = std::find_if(codegen_global_variables.begin(),
                                                    +
                                                    392  codegen_global_variables.end(),
                                                    +
                                                    393  symbol_comparator);
                                                    +
                                                    394  if (g != codegen_global_variables.end()) {
                                                    +
                                                    395  return global_variable_name(*g, use_instance);
                                                    +
                                                    396  }
                                                    +
                                                    397 
                                                    +
                                                    398  if (varname == naming::NTHREAD_DT_VARIABLE) {
                                                    +
                                                    399  return std::string("_nt->_") + naming::NTHREAD_DT_VARIABLE;
                                                    +
                                                    400  }
                                                    +
                                                    401 
                                                    +
                                                    402  // t in net_receive method is an argument to function and hence it should
                                                    +
                                                    403  // be used instead of nt->_t which is current time of thread
                                                    +
                                                    404  if (varname == naming::NTHREAD_T_VARIABLE && !printing_net_receive) {
                                                    +
                                                    405  return std::string("_nt->_") + naming::NTHREAD_T_VARIABLE;
                                                    +
                                                    406  }
                                                    +
                                                    407 
                                                    +
                                                    408  auto const iter =
                                                    +
                                                    409  std::find_if(info.neuron_global_variables.begin(),
                                                    +
                                                    410  info.neuron_global_variables.end(),
                                                    +
                                                    411  [&varname](auto const& entry) { return entry.first->get_name() == varname; });
                                                    +
                                                    412  if (iter != info.neuron_global_variables.end()) {
                                                    +
                                                    413  std::string ret;
                                                    +
                                                    414  if (use_instance) {
                                                    +
                                                    415  ret = "*(inst->";
                                                    +
                                                    416  }
                                                    +
                                                    417  ret.append(varname);
                                                    +
                                                    418  if (use_instance) {
                                                    +
                                                    419  ret.append(")");
                                                    +
                                                    420  }
                                                    +
                                                    421  return ret;
                                                    +
                                                    422  }
                                                    +
                                                    423 
                                                    +
                                                    424  // otherwise return original name
                                                    +
                                                    425  return varname;
                                                    +
                                                    426 }
                                                    +
                                                    427 
                                                    +
                                                    428 
                                                    +
                                                    429 /****************************************************************************************/
                                                    +
                                                    430 /* Main printing routines for code generation */
                                                    +
                                                    431 /****************************************************************************************/
                                                    +
                                                    432 
                                                    +
                                                    433 
                                                    + +
                                                    435  time_t current_time{};
                                                    +
                                                    436  time(&current_time);
                                                    +
                                                    437  std::string data_time_str{std::ctime(&current_time)};
                                                    +
                                                    438  auto version = nmodl::Version::NMODL_VERSION + " [" + nmodl::Version::GIT_REVISION + "]";
                                                    +
                                                    439 
                                                    +
                                                    440  printer->add_line("/*********************************************************");
                                                    +
                                                    441  printer->add_line("Model Name : ", info.mod_suffix);
                                                    +
                                                    442  printer->add_line("Filename : ", info.mod_file, ".mod");
                                                    +
                                                    443  printer->add_line("NMODL Version : ", nmodl_version());
                                                    +
                                                    444  printer->fmt_line("Vectorized : {}", info.vectorize);
                                                    +
                                                    445  printer->fmt_line("Threadsafe : {}", info.thread_safe);
                                                    +
                                                    446  printer->add_line("Created : ", stringutils::trim(data_time_str));
                                                    +
                                                    447  printer->add_line("Simulator : ", simulator_name());
                                                    +
                                                    448  printer->add_line("Backend : ", backend_name());
                                                    +
                                                    449  printer->add_line("NMODL Compiler : ", version);
                                                    +
                                                    450  printer->add_line("*********************************************************/");
                                                    +
                                                    451 }
                                                    +
                                                    452 
                                                    +
                                                    453 
                                                    + +
                                                    455  printer->add_newline();
                                                    +
                                                    456  printer->add_multi_line(R"CODE(
                                                    +
                                                    457  #include <math.h>
                                                    +
                                                    458  #include <stdio.h>
                                                    +
                                                    459  #include <stdlib.h>
                                                    +
                                                    460  )CODE");
                                                    +
                                                    461  if (!info.vectorize) {
                                                    +
                                                    462  printer->add_line("#include <vector>");
                                                    +
                                                    463  }
                                                    +
                                                    464 }
                                                    +
                                                    465 
                                                    +
                                                    466 
                                                    + +
                                                    468  printer->add_newline();
                                                    +
                                                    469  printer->add_multi_line(R"CODE(
                                                    +
                                                    470  #include "mech_api.h"
                                                    +
                                                    471  #include "neuron/cache/mechanism_range.hpp"
                                                    +
                                                    472  #include "nrniv_mf.h"
                                                    +
                                                    473  #include "section_fwd.hpp"
                                                    +
                                                    474  )CODE");
                                                    +
                                                    475 }
                                                    +
                                                    476 
                                                    +
                                                    477 
                                                    +
                                                    478 void CodegenNeuronCppVisitor::print_sdlists_init([[maybe_unused]] bool print_initializers) {
                                                    +
                                                    479  /// _initlists() should only be called once by the mechanism registration function
                                                    +
                                                    480  /// (_<mod_file>_reg())
                                                    +
                                                    481  printer->add_newline(2);
                                                    +
                                                    482  printer->push_block("static void _initlists()");
                                                    +
                                                    483  for (auto i = 0; i < info.prime_variables_by_order.size(); ++i) {
                                                    +
                                                    484  const auto& prime_var = info.prime_variables_by_order[i];
                                                    +
                                                    485  /// TODO: Something similar needs to happen for slist/dlist2 but I don't know their usage at
                                                    +
                                                    486  // the moment
                                                    +
                                                    487  /// TODO: We have to do checks and add errors similar to nocmodl in the
                                                    +
                                                    488  // SemanticAnalysisVisitor
                                                    +
                                                    489  if (prime_var->is_array()) {
                                                    +
                                                    490  /// TODO: Needs a for loop here. Look at
                                                    +
                                                    491  // https://github.com/neuronsimulator/nrn/blob/df001a436bcb4e23d698afe66c2a513819a6bfe8/src/nmodl/deriv.cpp#L524
                                                    +
                                                    492  /// TODO: Also needs a test
                                                    +
                                                    493  printer->fmt_push_block("for (int _i = 0; _i < {}; ++_i)", prime_var->get_length());
                                                    +
                                                    494  printer->fmt_line("/* {}[{}] */", prime_var->get_name(), prime_var->get_length());
                                                    +
                                                    495  printer->fmt_line("_slist1[{}+_i] = {{{}, _i}};",
                                                    +
                                                    496  i,
                                                    +
                                                    497  position_of_float_var(prime_var->get_name()));
                                                    +
                                                    498  const auto prime_var_deriv_name = "D" + prime_var->get_name();
                                                    +
                                                    499  printer->fmt_line("/* {}[{}] */", prime_var_deriv_name, prime_var->get_length());
                                                    +
                                                    500  printer->fmt_line("_dlist1[{}+_i] = {{{}, _i}};",
                                                    +
                                                    501  i,
                                                    +
                                                    502  position_of_float_var(prime_var_deriv_name));
                                                    +
                                                    503  printer->pop_block();
                                                    +
                                                    504  } else {
                                                    +
                                                    505  printer->fmt_line("/* {} */", prime_var->get_name());
                                                    +
                                                    506  printer->fmt_line("_slist1[{}] = {{{}, 0}};",
                                                    +
                                                    507  i,
                                                    +
                                                    508  position_of_float_var(prime_var->get_name()));
                                                    +
                                                    509  const auto prime_var_deriv_name = "D" + prime_var->get_name();
                                                    +
                                                    510  printer->fmt_line("/* {} */", prime_var_deriv_name);
                                                    +
                                                    511  printer->fmt_line("_dlist1[{}] = {{{}, 0}};",
                                                    +
                                                    512  i,
                                                    +
                                                    513  position_of_float_var(prime_var_deriv_name));
                                                    +
                                                    514  }
                                                    +
                                                    515  }
                                                    +
                                                    516  printer->pop_block();
                                                    +
                                                    517 }
                                                    +
                                                    518 
                                                    +
                                                    519 
                                                    + +
                                                    521  const auto value_initialize = print_initializers ? "{}" : "";
                                                    +
                                                    522 
                                                    +
                                                    523  /// TODO: Print only global variables printed in NEURON
                                                    +
                                                    524  printer->add_newline(2);
                                                    +
                                                    525  printer->add_line("/* NEURON global variables */");
                                                    +
                                                    526  if (info.primes_size != 0) {
                                                    +
                                                    527  printer->fmt_line("static neuron::container::field_index _slist1[{0}], _dlist1[{0}];",
                                                    +
                                                    528  info.primes_size);
                                                    +
                                                    529  }
                                                    +
                                                    530 
                                                    +
                                                    531  for (const auto& ion: info.ions) {
                                                    +
                                                    532  printer->fmt_line("static Symbol* _{}_sym;", ion.name);
                                                    +
                                                    533  }
                                                    +
                                                    534 
                                                    +
                                                    535  printer->add_line("static int mech_type;");
                                                    +
                                                    536 
                                                    +
                                                    537  if (info.point_process) {
                                                    +
                                                    538  printer->add_line("static int _pointtype;");
                                                    +
                                                    539  } else {
                                                    +
                                                    540  printer->add_multi_line(R"CODE(
                                                    +
                                                    541  static Prop* _extcall_prop;
                                                    +
                                                    542  /* _prop_id kind of shadows _extcall_prop to allow validity checking. */
                                                    +
                                                    543  static _nrn_non_owning_id_without_container _prop_id{};)CODE");
                                                    +
                                                    544  }
                                                    +
                                                    545 
                                                    +
                                                    546  printer->fmt_line("static int {} = {};",
                                                    + +
                                                    548  info.pointer_variables.size() > 0
                                                    +
                                                    549  ? static_cast<int>(info.pointer_variables.size())
                                                    +
                                                    550  : -1);
                                                    +
                                                    551 
                                                    +
                                                    552  // Start printing the CNRN-style global variables.
                                                    +
                                                    553  auto float_type = default_float_data_type();
                                                    +
                                                    554  printer->add_newline(2);
                                                    +
                                                    555  printer->add_line("/** all global variables */");
                                                    +
                                                    556  printer->fmt_push_block("struct {}", global_struct());
                                                    557 
                                                    -
                                                    558  printer->add_newline(2);
                                                    -
                                                    559  printer->add_line("/** connect global (array) variables to hoc -- */");
                                                    -
                                                    560  printer->add_line("static DoubVec hoc_vector_double[] = {");
                                                    -
                                                    561  printer->increase_indent();
                                                    -
                                                    562  variable_printer(globals, true, true);
                                                    -
                                                    563  variable_printer(thread_vars, true, true);
                                                    -
                                                    564  printer->add_line("{nullptr, nullptr, 0}");
                                                    -
                                                    565  printer->decrease_indent();
                                                    -
                                                    566  printer->add_line("};");
                                                    -
                                                    567 }
                                                    -
                                                    568 
                                                    - -
                                                    570  printer->add_newline(2);
                                                    -
                                                    571  printer->fmt_push_block("static {} make_instance_{}(_nrn_mechanism_cache_range& _ml)",
                                                    -
                                                    572  instance_struct(),
                                                    -
                                                    573  info.mod_suffix);
                                                    -
                                                    574  printer->fmt_push_block("return {}", instance_struct());
                                                    -
                                                    575 
                                                    -
                                                    576  std::vector<std::string> make_instance_args;
                                                    -
                                                    577 
                                                    -
                                                    578  const auto codegen_float_variables_size = codegen_float_variables.size();
                                                    -
                                                    579  for (int i = 0; i < codegen_float_variables_size; ++i) {
                                                    -
                                                    580  const auto& float_var = codegen_float_variables[i];
                                                    -
                                                    581  if (float_var->is_array()) {
                                                    -
                                                    582  make_instance_args.push_back(
                                                    -
                                                    583  fmt::format("_ml.template data_array_ptr<{}, {}>()", i, float_var->get_length()));
                                                    -
                                                    584  } else {
                                                    -
                                                    585  make_instance_args.push_back(fmt::format("_ml.template fpfield_ptr<{}>()", i));
                                                    -
                                                    586  }
                                                    -
                                                    587  }
                                                    -
                                                    588 
                                                    -
                                                    589  const auto codegen_int_variables_size = codegen_int_variables.size();
                                                    -
                                                    590  for (size_t i = 0; i < codegen_int_variables_size; ++i) {
                                                    -
                                                    591  const auto& var = codegen_int_variables[i];
                                                    -
                                                    592  auto name = var.symbol->get_name();
                                                    -
                                                    593  auto const variable = [&var, i]() -> std::string {
                                                    -
                                                    594  if (var.is_index || var.is_integer) {
                                                    -
                                                    595  return "";
                                                    -
                                                    596  } else if (var.is_vdata) {
                                                    -
                                                    597  return "";
                                                    -
                                                    598  } else {
                                                    -
                                                    599  return fmt::format("_ml.template dptr_field_ptr<{}>()", i);
                                                    -
                                                    600  }
                                                    -
                                                    601  }();
                                                    -
                                                    602  if (variable != "") {
                                                    -
                                                    603  make_instance_args.push_back(variable);
                                                    -
                                                    604  }
                                                    -
                                                    605  }
                                                    -
                                                    606 
                                                    -
                                                    607  printer->add_multi_line(fmt::format("{}", fmt::join(make_instance_args, ",\n")));
                                                    -
                                                    608 
                                                    -
                                                    609  printer->pop_block(";");
                                                    -
                                                    610  printer->pop_block();
                                                    -
                                                    611 }
                                                    -
                                                    612 
                                                    - -
                                                    614  /// TODO: Write this according to NEURON
                                                    -
                                                    615  printer->add_newline(2);
                                                    -
                                                    616  printer->add_line("/** register channel with the simulator */");
                                                    -
                                                    617  printer->fmt_push_block("extern \"C\" void _{}_reg()", info.mod_file);
                                                    -
                                                    618  printer->add_line("_initlists();");
                                                    -
                                                    619  printer->add_newline();
                                                    -
                                                    620 
                                                    -
                                                    621  const auto compute_functions_parameters =
                                                    -
                                                    622  breakpoint_exist()
                                                    -
                                                    623  ? fmt::format("{}, {}, {}",
                                                    -
                                                    624  nrn_cur_required() ? method_name(naming::NRN_CUR_METHOD) : "nullptr",
                                                    -
                                                    625  method_name(naming::NRN_JACOB_METHOD),
                                                    -
                                                    626  nrn_state_required() ? method_name(naming::NRN_STATE_METHOD) : "nullptr")
                                                    -
                                                    627  : "nullptr, nullptr, nullptr";
                                                    -
                                                    628  const auto register_mech_args = fmt::format("{}, {}, {}, {}, {}, {}",
                                                    -
                                                    629  get_channel_info_var_name(),
                                                    -
                                                    630  method_name(naming::NRN_ALLOC_METHOD),
                                                    -
                                                    631  compute_functions_parameters,
                                                    -
                                                    632  method_name(naming::NRN_INIT_METHOD),
                                                    - -
                                                    634  1 + info.thread_data_index);
                                                    -
                                                    635  printer->fmt_line("register_mech({});", register_mech_args);
                                                    -
                                                    636 
                                                    -
                                                    637  // type related information
                                                    -
                                                    638  printer->add_newline();
                                                    -
                                                    639  printer->fmt_line("mech_type = nrn_get_mechtype({}[1]);", get_channel_info_var_name());
                                                    -
                                                    640 
                                                    -
                                                    641  // More things to add here
                                                    -
                                                    642  printer->add_line("_nrn_mechanism_register_data_fields(mech_type,");
                                                    -
                                                    643  printer->increase_indent();
                                                    -
                                                    644  const auto codegen_float_variables_size = codegen_float_variables.size();
                                                    +
                                                    558  if (!info.ions.empty()) {
                                                    +
                                                    559  // TODO implement these when needed.
                                                    +
                                                    560  }
                                                    +
                                                    561 
                                                    +
                                                    562  if (!info.vectorize && !info.top_local_variables.empty()) {
                                                    +
                                                    563  throw std::runtime_error("Not implemented, global vectorize something.");
                                                    +
                                                    564  }
                                                    +
                                                    565 
                                                    +
                                                    566  if (!info.thread_variables.empty()) {
                                                    +
                                                    567  throw std::runtime_error("Not implemented, global thread variables.");
                                                    +
                                                    568  }
                                                    +
                                                    569 
                                                    +
                                                    570  if (info.table_count > 0) {
                                                    +
                                                    571  throw std::runtime_error("Not implemented, global table count.");
                                                    +
                                                    572  }
                                                    +
                                                    573 
                                                    +
                                                    574  for (const auto& var: info.state_vars) {
                                                    +
                                                    575  auto name = var->get_name() + "0";
                                                    +
                                                    576  auto symbol = program_symtab->lookup(name);
                                                    +
                                                    577  if (symbol == nullptr) {
                                                    +
                                                    578  printer->fmt_line("{} {}{};", float_type, name, value_initialize);
                                                    +
                                                    579  codegen_global_variables.push_back(make_symbol(name));
                                                    +
                                                    580  }
                                                    +
                                                    581  }
                                                    +
                                                    582 
                                                    +
                                                    583  for (const auto& var: info.global_variables) {
                                                    +
                                                    584  auto name = var->get_name();
                                                    +
                                                    585  auto length = var->get_length();
                                                    +
                                                    586  if (var->is_array()) {
                                                    +
                                                    587  printer->fmt_line("{} {}[{}] /* TODO init const-array */;", float_type, name, length);
                                                    +
                                                    588  } else {
                                                    +
                                                    589  double value{};
                                                    +
                                                    590  if (auto const& value_ptr = var->get_value()) {
                                                    +
                                                    591  value = *value_ptr;
                                                    +
                                                    592  }
                                                    +
                                                    593  printer->fmt_line("{} {}{};",
                                                    +
                                                    594  float_type,
                                                    +
                                                    595  name,
                                                    +
                                                    596  print_initializers ? fmt::format("{{{:g}}}", value) : std::string{});
                                                    +
                                                    597  }
                                                    +
                                                    598  codegen_global_variables.push_back(var);
                                                    +
                                                    599  }
                                                    +
                                                    600 
                                                    +
                                                    601 
                                                    +
                                                    602  for (const auto& f: info.function_tables) {
                                                    +
                                                    603  throw std::runtime_error("Not implemented, global function tables.");
                                                    +
                                                    604  }
                                                    +
                                                    605 
                                                    +
                                                    606  if (info.vectorize && info.thread_data_index) {
                                                    +
                                                    607  throw std::runtime_error("Not implemented, global vectorize something else.");
                                                    +
                                                    608  }
                                                    +
                                                    609 
                                                    +
                                                    610  printer->pop_block(";");
                                                    +
                                                    611 
                                                    +
                                                    612  print_global_var_struct_assertions();
                                                    +
                                                    613  print_global_var_struct_decl();
                                                    +
                                                    614 }
                                                    +
                                                    615 
                                                    +
                                                    616 
                                                    +
                                                    617 /// TODO: Same as CoreNEURON?
                                                    + +
                                                    619  /// TODO: Write HocParmLimits and other HOC global variables (delta_t)
                                                    +
                                                    620  // Probably needs more changes
                                                    +
                                                    621  auto variable_printer =
                                                    +
                                                    622  [&](const std::vector<SymbolType>& variables, bool if_array, bool if_vector) {
                                                    +
                                                    623  for (const auto& variable: variables) {
                                                    +
                                                    624  if (variable->is_array() == if_array) {
                                                    +
                                                    625  // false => do not use the instance struct, which is not
                                                    +
                                                    626  // defined in the global declaration that we are printing
                                                    +
                                                    627  auto name = get_variable_name(variable->get_name(), false);
                                                    +
                                                    628  auto ename = add_escape_quote(variable->get_name() + "_" + info.mod_suffix);
                                                    +
                                                    629  auto length = variable->get_length();
                                                    +
                                                    630  if (if_vector) {
                                                    +
                                                    631  printer->fmt_line("{{{}, {}, {}}},", ename, name, length);
                                                    +
                                                    632  } else {
                                                    +
                                                    633  printer->fmt_line("{{{}, &{}}},", ename, name);
                                                    +
                                                    634  }
                                                    +
                                                    635  }
                                                    +
                                                    636  }
                                                    +
                                                    637  };
                                                    +
                                                    638 
                                                    +
                                                    639  auto globals = info.global_variables;
                                                    +
                                                    640  auto thread_vars = info.thread_variables;
                                                    +
                                                    641 
                                                    +
                                                    642  if (info.table_count > 0) {
                                                    +
                                                    643  globals.push_back(make_symbol(naming::USE_TABLE_VARIABLE));
                                                    +
                                                    644  }
                                                    645 
                                                    -
                                                    646  std::vector<std::string> mech_register_args;
                                                    -
                                                    647  for (int i = 0; i < codegen_float_variables_size; ++i) {
                                                    -
                                                    648  const auto& float_var = codegen_float_variables[i];
                                                    -
                                                    649  if (float_var->is_array()) {
                                                    -
                                                    650  mech_register_args.push_back(
                                                    -
                                                    651  fmt::format("_nrn_mechanism_field<double>{{\"{}\", {}}} /* {} */",
                                                    -
                                                    652  float_var->get_name(),
                                                    -
                                                    653  float_var->get_length(),
                                                    -
                                                    654  i));
                                                    -
                                                    655  } else {
                                                    -
                                                    656  mech_register_args.push_back(fmt::format(
                                                    -
                                                    657  "_nrn_mechanism_field<double>{{\"{}\"}} /* {} */", float_var->get_name(), i));
                                                    -
                                                    658  }
                                                    -
                                                    659  }
                                                    -
                                                    660 
                                                    -
                                                    661  const auto codegen_int_variables_size = codegen_int_variables.size();
                                                    -
                                                    662  for (int i = 0; i < codegen_int_variables_size; ++i) {
                                                    -
                                                    663  const auto& int_var = codegen_int_variables[i];
                                                    -
                                                    664  const auto& name = int_var.symbol->get_name();
                                                    -
                                                    665  if (i != info.semantics[i].index) {
                                                    -
                                                    666  throw std::runtime_error("Broken logic.");
                                                    -
                                                    667  }
                                                    -
                                                    668 
                                                    -
                                                    669  mech_register_args.push_back(
                                                    -
                                                    670  fmt::format("_nrn_mechanism_field<double*>{{\"{}\", \"{}\"}} /* {} */",
                                                    -
                                                    671  name,
                                                    -
                                                    672  info.semantics[i].name,
                                                    -
                                                    673  i));
                                                    -
                                                    674  }
                                                    -
                                                    675  if (info.emit_cvode) {
                                                    -
                                                    676  mech_register_args.push_back(
                                                    -
                                                    677  "_nrn_mechanism_field<int>{\"_cvode_ieq\", \"cvodeieq\"} /* 0 */");
                                                    -
                                                    678  }
                                                    -
                                                    679 
                                                    -
                                                    680  printer->add_multi_line(fmt::format("{}", fmt::join(mech_register_args, ",\n")));
                                                    -
                                                    681 
                                                    -
                                                    682  printer->decrease_indent();
                                                    -
                                                    683  printer->add_line(");");
                                                    -
                                                    684  printer->add_newline();
                                                    -
                                                    685 
                                                    -
                                                    686  printer->fmt_line("hoc_register_prop_size(mech_type, {}, {});",
                                                    -
                                                    687  codegen_float_variables_size,
                                                    -
                                                    688  codegen_int_variables_size);
                                                    -
                                                    689 
                                                    -
                                                    690  for (int i = 0; i < codegen_int_variables_size; ++i) {
                                                    -
                                                    691  const auto& int_var = codegen_int_variables[i];
                                                    -
                                                    692  const auto& name = int_var.symbol->get_name();
                                                    -
                                                    693  if (i != info.semantics[i].index) {
                                                    -
                                                    694  throw std::runtime_error("Broken logic.");
                                                    -
                                                    695  }
                                                    -
                                                    696 
                                                    -
                                                    697  printer->fmt_line("hoc_register_dparam_semantics(mech_type, {}, \"{}\");",
                                                    -
                                                    698  i,
                                                    -
                                                    699  info.semantics[i].name);
                                                    -
                                                    700  }
                                                    -
                                                    701 
                                                    -
                                                    702  printer->pop_block();
                                                    -
                                                    703 }
                                                    -
                                                    704 
                                                    -
                                                    705 
                                                    - -
                                                    707  auto const value_initialize = print_initializers ? "{}" : "";
                                                    -
                                                    708  auto int_type = default_int_data_type();
                                                    -
                                                    709  printer->add_newline(2);
                                                    -
                                                    710  printer->add_line("/** all mechanism instance variables and global variables */");
                                                    -
                                                    711  printer->fmt_push_block("struct {} ", instance_struct());
                                                    -
                                                    712 
                                                    -
                                                    713  for (auto const& [var, type]: info.neuron_global_variables) {
                                                    -
                                                    714  auto const name = var->get_name();
                                                    -
                                                    715  printer->fmt_line("{}* {}{};",
                                                    -
                                                    716  type,
                                                    -
                                                    717  name,
                                                    -
                                                    718  print_initializers ? fmt::format("{{&coreneuron::{}}}", name)
                                                    -
                                                    719  : std::string{});
                                                    -
                                                    720  }
                                                    -
                                                    721  for (auto& var: codegen_float_variables) {
                                                    -
                                                    722  const auto& name = var->get_name();
                                                    -
                                                    723  printer->fmt_line("double* {}{};", name, value_initialize);
                                                    -
                                                    724  }
                                                    -
                                                    725  for (auto& var: codegen_int_variables) {
                                                    -
                                                    726  const auto& name = var.symbol->get_name();
                                                    -
                                                    727  if (var.is_index || var.is_integer) {
                                                    -
                                                    728  auto qualifier = var.is_constant ? "const " : "";
                                                    -
                                                    729  printer->fmt_line("{}{}* const* {}{};", qualifier, int_type, name, value_initialize);
                                                    -
                                                    730  } else {
                                                    -
                                                    731  auto qualifier = var.is_constant ? "const " : "";
                                                    -
                                                    732  auto type = var.is_vdata ? "void*" : default_float_data_type();
                                                    -
                                                    733  printer->fmt_line("{}{}* const* {}{};", qualifier, type, name, value_initialize);
                                                    -
                                                    734  }
                                                    -
                                                    735  }
                                                    -
                                                    736 
                                                    -
                                                    737  printer->fmt_line("{}* {}{};",
                                                    -
                                                    738  global_struct(),
                                                    - -
                                                    740  print_initializers ? fmt::format("{{&{}}}", global_struct_instance())
                                                    -
                                                    741  : std::string{});
                                                    -
                                                    742  printer->pop_block(";");
                                                    -
                                                    743 }
                                                    -
                                                    744 
                                                    -
                                                    745 
                                                    - -
                                                    747  // read ion statements
                                                    -
                                                    748  auto read_statements = ion_read_statements(BlockType::Initial);
                                                    -
                                                    749  for (auto& statement: read_statements) {
                                                    -
                                                    750  printer->add_line(statement);
                                                    -
                                                    751  }
                                                    -
                                                    752 
                                                    -
                                                    753  // initial block
                                                    -
                                                    754  if (node != nullptr) {
                                                    -
                                                    755  const auto& block = node->get_statement_block();
                                                    -
                                                    756  print_statement_block(*block, false, false);
                                                    -
                                                    757  }
                                                    -
                                                    758 
                                                    -
                                                    759  // write ion statements
                                                    -
                                                    760  auto write_statements = ion_write_statements(BlockType::Initial);
                                                    -
                                                    761  for (auto& statement: write_statements) {
                                                    -
                                                    762  auto text = process_shadow_update_statement(statement, BlockType::Initial);
                                                    -
                                                    763  printer->add_line(text);
                                                    -
                                                    764  }
                                                    -
                                                    765 }
                                                    -
                                                    766 
                                                    -
                                                    767 
                                                    - -
                                                    769  const std::string& function_name) {
                                                    -
                                                    770  std::string method = function_name.empty() ? compute_method_name(type) : function_name;
                                                    -
                                                    771  std::string args =
                                                    -
                                                    772  "_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int "
                                                    -
                                                    773  "_type";
                                                    -
                                                    774  printer->fmt_push_block("void {}({})", method, args);
                                                    -
                                                    775 
                                                    -
                                                    776  printer->add_line("_nrn_mechanism_cache_range _lmr{_sorted_token, *_nt, *_ml_arg, _type};");
                                                    -
                                                    777  printer->fmt_line("auto inst = make_instance_{}(_lmr);", info.mod_suffix);
                                                    -
                                                    778  printer->add_line("auto nodecount = _ml_arg->nodecount;");
                                                    -
                                                    779 }
                                                    -
                                                    780 
                                                    -
                                                    781 
                                                    -
                                                    782 void CodegenNeuronCppVisitor::print_nrn_init(bool skip_init_check) {
                                                    -
                                                    783  printer->add_newline(2);
                                                    -
                                                    784 
                                                    -
                                                    785  print_global_function_common_code(BlockType::Initial);
                                                    -
                                                    786 
                                                    -
                                                    787  printer->push_block("for (int id = 0; id < nodecount; id++)");
                                                    -
                                                    788  print_initial_block(info.initial_node);
                                                    -
                                                    789  printer->pop_block();
                                                    -
                                                    790 
                                                    -
                                                    791  printer->pop_block();
                                                    -
                                                    792 }
                                                    -
                                                    793 
                                                    - -
                                                    795  printer->add_newline(2);
                                                    -
                                                    796  printer->add_line("/** nrn_jacob function */");
                                                    -
                                                    797 
                                                    -
                                                    798  printer->fmt_line(
                                                    -
                                                    799  "static void {}(_nrn_model_sorted_token const& _sorted_token, NrnThread* "
                                                    -
                                                    800  "_nt, Memb_list* _ml_arg, int _type) {{}}",
                                                    -
                                                    801  method_name(naming::NRN_JACOB_METHOD));
                                                    -
                                                    802 }
                                                    -
                                                    803 
                                                    -
                                                    804 
                                                    -
                                                    805 /// TODO: Edit for NEURON
                                                    - -
                                                    807  return;
                                                    -
                                                    808 }
                                                    -
                                                    809 
                                                    -
                                                    810 
                                                    -
                                                    811 /// TODO: Edit for NEURON
                                                    - -
                                                    813  return;
                                                    -
                                                    814 }
                                                    +
                                                    646  printer->add_newline(2);
                                                    +
                                                    647  printer->add_line("/** connect global (scalar) variables to hoc -- */");
                                                    +
                                                    648  printer->add_line("static DoubScal hoc_scalar_double[] = {");
                                                    +
                                                    649  printer->increase_indent();
                                                    +
                                                    650  variable_printer(globals, false, false);
                                                    +
                                                    651  variable_printer(thread_vars, false, false);
                                                    +
                                                    652  printer->add_line("{nullptr, nullptr}");
                                                    +
                                                    653  printer->decrease_indent();
                                                    +
                                                    654  printer->add_line("};");
                                                    +
                                                    655 
                                                    +
                                                    656  printer->add_newline(2);
                                                    +
                                                    657  printer->add_line("/** connect global (array) variables to hoc -- */");
                                                    +
                                                    658  printer->add_line("static DoubVec hoc_vector_double[] = {");
                                                    +
                                                    659  printer->increase_indent();
                                                    +
                                                    660  variable_printer(globals, true, true);
                                                    +
                                                    661  variable_printer(thread_vars, true, true);
                                                    +
                                                    662  printer->add_line("{nullptr, nullptr, 0}");
                                                    +
                                                    663  printer->decrease_indent();
                                                    +
                                                    664  printer->add_line("};");
                                                    +
                                                    665 
                                                    +
                                                    666  printer->add_newline(2);
                                                    +
                                                    667  printer->add_line("/* connect user functions to hoc names */");
                                                    +
                                                    668  printer->add_line("static VoidFunc hoc_intfunc[] = {");
                                                    +
                                                    669  printer->increase_indent();
                                                    +
                                                    670  if (info.point_process) {
                                                    +
                                                    671  printer->add_line("{0, 0}");
                                                    +
                                                    672  printer->decrease_indent();
                                                    +
                                                    673  printer->add_line("};");
                                                    +
                                                    674  printer->add_line("static Member_func _member_func[] = {");
                                                    +
                                                    675  printer->increase_indent();
                                                    +
                                                    676  printer->add_multi_line(R"CODE(
                                                    +
                                                    677  {"loc", _hoc_loc_pnt},
                                                    +
                                                    678  {"has_loc", _hoc_has_loc},
                                                    +
                                                    679  {"get_loc", _hoc_get_loc_pnt},)CODE");
                                                    +
                                                    680  } else {
                                                    +
                                                    681  printer->fmt_line("{{\"setdata_{}\", _hoc_setdata}},", info.mod_suffix);
                                                    +
                                                    682  }
                                                    +
                                                    683 
                                                    +
                                                    684  /// TODO: Add _hoc_procedures and _hoc_functions
                                                    +
                                                    685 
                                                    +
                                                    686  printer->add_line("{0, 0}");
                                                    +
                                                    687  printer->decrease_indent();
                                                    +
                                                    688  printer->add_line("};");
                                                    +
                                                    689 }
                                                    +
                                                    690 
                                                    + +
                                                    692  printer->add_newline(2);
                                                    +
                                                    693  printer->fmt_push_block("static {} make_instance_{}(_nrn_mechanism_cache_range& _ml)",
                                                    +
                                                    694  instance_struct(),
                                                    +
                                                    695  info.mod_suffix);
                                                    +
                                                    696  printer->fmt_push_block("return {}", instance_struct());
                                                    +
                                                    697 
                                                    +
                                                    698  std::vector<std::string> make_instance_args;
                                                    +
                                                    699 
                                                    +
                                                    700  const auto codegen_float_variables_size = codegen_float_variables.size();
                                                    +
                                                    701  for (int i = 0; i < codegen_float_variables_size; ++i) {
                                                    +
                                                    702  const auto& float_var = codegen_float_variables[i];
                                                    +
                                                    703  if (float_var->is_array()) {
                                                    +
                                                    704  make_instance_args.push_back(
                                                    +
                                                    705  fmt::format("_ml.template data_array_ptr<{}, {}>()", i, float_var->get_length()));
                                                    +
                                                    706  } else {
                                                    +
                                                    707  make_instance_args.push_back(fmt::format("_ml.template fpfield_ptr<{}>()", i));
                                                    +
                                                    708  }
                                                    +
                                                    709  }
                                                    +
                                                    710 
                                                    +
                                                    711  const auto codegen_int_variables_size = codegen_int_variables.size();
                                                    +
                                                    712  for (size_t i = 0; i < codegen_int_variables_size; ++i) {
                                                    +
                                                    713  const auto& var = codegen_int_variables[i];
                                                    +
                                                    714  auto name = var.symbol->get_name();
                                                    +
                                                    715  auto const variable = [&var, i]() -> std::string {
                                                    +
                                                    716  if (var.is_index || var.is_integer) {
                                                    +
                                                    717  return "";
                                                    +
                                                    718  } else if (var.is_vdata) {
                                                    +
                                                    719  return "";
                                                    +
                                                    720  } else {
                                                    +
                                                    721  return fmt::format("_ml.template dptr_field_ptr<{}>()", i);
                                                    +
                                                    722  }
                                                    +
                                                    723  }();
                                                    +
                                                    724  if (variable != "") {
                                                    +
                                                    725  make_instance_args.push_back(variable);
                                                    +
                                                    726  }
                                                    +
                                                    727  }
                                                    +
                                                    728 
                                                    +
                                                    729  printer->add_multi_line(fmt::format("{}", fmt::join(make_instance_args, ",\n")));
                                                    +
                                                    730 
                                                    +
                                                    731  printer->pop_block(";");
                                                    +
                                                    732  printer->pop_block();
                                                    +
                                                    733 }
                                                    +
                                                    734 
                                                    + +
                                                    736  /// TODO: Write this according to NEURON
                                                    +
                                                    737  printer->add_newline(2);
                                                    +
                                                    738  printer->add_line("/** register channel with the simulator */");
                                                    +
                                                    739  printer->fmt_push_block("extern \"C\" void _{}_reg()", info.mod_file);
                                                    +
                                                    740  printer->add_line("_initlists();");
                                                    +
                                                    741 
                                                    +
                                                    742  printer->add_newline();
                                                    +
                                                    743 
                                                    +
                                                    744  for (const auto& ion: info.ions) {
                                                    +
                                                    745  printer->fmt_line("ion_reg(\"{}\", {});", ion.name, "-10000.");
                                                    +
                                                    746  }
                                                    +
                                                    747  printer->add_newline();
                                                    +
                                                    748 
                                                    +
                                                    749  if (info.diam_used) {
                                                    +
                                                    750  printer->add_line("_morphology_sym = hoc_lookup(\"morphology\");");
                                                    +
                                                    751  printer->add_newline();
                                                    +
                                                    752  }
                                                    +
                                                    753 
                                                    +
                                                    754  for (const auto& ion: info.ions) {
                                                    +
                                                    755  printer->fmt_line("_{0}_sym = hoc_lookup(\"{0}_ion\");", ion.name);
                                                    +
                                                    756  }
                                                    +
                                                    757 
                                                    +
                                                    758  printer->add_newline();
                                                    +
                                                    759 
                                                    +
                                                    760  const auto compute_functions_parameters =
                                                    +
                                                    761  breakpoint_exist()
                                                    +
                                                    762  ? fmt::format("{}, {}, {}",
                                                    +
                                                    763  nrn_cur_required() ? method_name(naming::NRN_CUR_METHOD) : "nullptr",
                                                    +
                                                    764  method_name(naming::NRN_JACOB_METHOD),
                                                    +
                                                    765  nrn_state_required() ? method_name(naming::NRN_STATE_METHOD) : "nullptr")
                                                    +
                                                    766  : "nullptr, nullptr, nullptr";
                                                    +
                                                    767  const auto register_mech_args = fmt::format("{}, {}, {}, {}, {}, {}",
                                                    +
                                                    768  get_channel_info_var_name(),
                                                    +
                                                    769  method_name(naming::NRN_ALLOC_METHOD),
                                                    +
                                                    770  compute_functions_parameters,
                                                    +
                                                    771  method_name(naming::NRN_INIT_METHOD),
                                                    + +
                                                    773  1 + info.thread_data_index);
                                                    +
                                                    774  if (info.point_process) {
                                                    +
                                                    775  printer->fmt_line(
                                                    +
                                                    776  "_pointtype = point_register_mech({}, _hoc_create_pnt, _hoc_destroy_pnt, "
                                                    +
                                                    777  "_member_func);",
                                                    +
                                                    778  register_mech_args);
                                                    +
                                                    779  } else {
                                                    +
                                                    780  printer->fmt_line("register_mech({});", register_mech_args);
                                                    +
                                                    781  }
                                                    +
                                                    782 
                                                    +
                                                    783  /// type related information
                                                    +
                                                    784  printer->add_newline();
                                                    +
                                                    785  printer->fmt_line("mech_type = nrn_get_mechtype({}[1]);", get_channel_info_var_name());
                                                    +
                                                    786 
                                                    +
                                                    787  /// Call _nrn_mechanism_register_data_fields() with the correct arguments
                                                    +
                                                    788  /// Geenerated code follows the style underneath
                                                    +
                                                    789  ///
                                                    +
                                                    790  /// _nrn_mechanism_register_data_fields(mech_type,
                                                    +
                                                    791  /// _nrn_mechanism_field<double>{"var_name"}, /* float var index 0 */
                                                    +
                                                    792  /// ...
                                                    +
                                                    793  /// );
                                                    +
                                                    794  ///
                                                    +
                                                    795  /// TODO: More things to add here
                                                    +
                                                    796  printer->add_line("_nrn_mechanism_register_data_fields(mech_type,");
                                                    +
                                                    797  printer->increase_indent();
                                                    +
                                                    798 
                                                    +
                                                    799  const auto codegen_float_variables_size = codegen_float_variables.size();
                                                    +
                                                    800  std::vector<std::string> mech_register_args;
                                                    +
                                                    801 
                                                    +
                                                    802  for (int i = 0; i < codegen_float_variables_size; ++i) {
                                                    +
                                                    803  const auto& float_var = codegen_float_variables[i];
                                                    +
                                                    804  if (float_var->is_array()) {
                                                    +
                                                    805  mech_register_args.push_back(
                                                    +
                                                    806  fmt::format("_nrn_mechanism_field<double>{{\"{}\", {}}} /* {} */",
                                                    +
                                                    807  float_var->get_name(),
                                                    +
                                                    808  float_var->get_length(),
                                                    +
                                                    809  i));
                                                    +
                                                    810  } else {
                                                    +
                                                    811  mech_register_args.push_back(fmt::format(
                                                    +
                                                    812  "_nrn_mechanism_field<double>{{\"{}\"}} /* {} */", float_var->get_name(), i));
                                                    +
                                                    813  }
                                                    +
                                                    814  }
                                                    815 
                                                    -
                                                    816 
                                                    -
                                                    817 /// TODO: Print the equivalent of `nrn_alloc_<mech_name>`
                                                    - -
                                                    819  printer->add_newline(2);
                                                    -
                                                    820  auto method = method_name(naming::NRN_ALLOC_METHOD);
                                                    -
                                                    821  printer->fmt_push_block("static void {}(Prop* _prop)", method);
                                                    -
                                                    822 
                                                    -
                                                    823  const auto codegen_int_variables_size = codegen_int_variables.size();
                                                    -
                                                    824 
                                                    -
                                                    825  // TODO number of datum is the number of integer vars.
                                                    -
                                                    826  printer->fmt_line("Datum *_ppvar = nrn_prop_datum_alloc(mech_type, {}, _prop);",
                                                    -
                                                    827  codegen_int_variables_size);
                                                    -
                                                    828  printer->fmt_line("_nrn_mechanism_access_dparam(_prop) = _ppvar;");
                                                    -
                                                    829 
                                                    -
                                                    830  for (const auto& ion: info.ions) {
                                                    -
                                                    831  printer->fmt_line("Symbol * {}_sym = hoc_lookup(\"{}_ion\");", ion.name, ion.name);
                                                    -
                                                    832  printer->fmt_line("Prop * {}_prop = need_memb({}_sym);", ion.name, ion.name);
                                                    -
                                                    833 
                                                    -
                                                    834  for (size_t i = 0; i < codegen_int_variables_size; ++i) {
                                                    -
                                                    835  const auto& var = codegen_int_variables[i];
                                                    +
                                                    816  const auto codegen_int_variables_size = codegen_int_variables.size();
                                                    +
                                                    817  for (int i = 0; i < codegen_int_variables_size; ++i) {
                                                    +
                                                    818  const auto& int_var = codegen_int_variables[i];
                                                    +
                                                    819  const auto& name = int_var.symbol->get_name();
                                                    +
                                                    820  if (i != info.semantics[i].index) {
                                                    +
                                                    821  throw std::runtime_error("Broken logic.");
                                                    +
                                                    822  }
                                                    +
                                                    823 
                                                    +
                                                    824  auto type = (name == naming::POINT_PROCESS_VARIABLE) ? "Point_process*" : "double*";
                                                    +
                                                    825  mech_register_args.push_back(
                                                    +
                                                    826  fmt::format("_nrn_mechanism_field<{}>{{\"{}\", \"{}\"}} /* {} */",
                                                    +
                                                    827  type,
                                                    +
                                                    828  name,
                                                    +
                                                    829  info.semantics[i].name,
                                                    +
                                                    830  i));
                                                    +
                                                    831  }
                                                    +
                                                    832  if (info.emit_cvode) {
                                                    +
                                                    833  mech_register_args.push_back(
                                                    +
                                                    834  "_nrn_mechanism_field<int>{\"_cvode_ieq\", \"cvodeieq\"} /* 0 */");
                                                    +
                                                    835  }
                                                    836 
                                                    -
                                                    837  // if(var.symbol->has_any_property(NmodlType::useion)) {
                                                    -
                                                    838  const std::string& var_name = var.symbol->get_name();
                                                    -
                                                    839  if (var_name.rfind("ion_", 0) != 0) {
                                                    -
                                                    840  continue;
                                                    -
                                                    841  }
                                                    +
                                                    837  printer->add_multi_line(fmt::format("{}", fmt::join(mech_register_args, ",\n")));
                                                    +
                                                    838 
                                                    +
                                                    839  printer->decrease_indent();
                                                    +
                                                    840  printer->add_line(");");
                                                    +
                                                    841  printer->add_newline();
                                                    842 
                                                    -
                                                    843  std::string ion_var_name = std::string(var_name.begin() + 4, var_name.end());
                                                    -
                                                    844  if (ion.is_ionic_variable(ion_var_name)) {
                                                    -
                                                    845  printer->fmt_line("_ppvar[{}] = _nrn_mechanism_get_param_handle({}_prop, {});",
                                                    -
                                                    846  i,
                                                    -
                                                    847  ion.name,
                                                    -
                                                    848  ion.variable_index(ion_var_name));
                                                    -
                                                    849  }
                                                    -
                                                    850  // }
                                                    -
                                                    851  }
                                                    -
                                                    852  }
                                                    +
                                                    843  printer->fmt_line("hoc_register_prop_size(mech_type, {}, {});",
                                                    +
                                                    844  codegen_float_variables_size,
                                                    +
                                                    845  codegen_int_variables_size);
                                                    +
                                                    846 
                                                    +
                                                    847  for (int i = 0; i < codegen_int_variables_size; ++i) {
                                                    +
                                                    848  const auto& int_var = codegen_int_variables[i];
                                                    +
                                                    849  const auto& name = int_var.symbol->get_name();
                                                    +
                                                    850  if (i != info.semantics[i].index) {
                                                    +
                                                    851  throw std::runtime_error("Broken logic.");
                                                    +
                                                    852  }
                                                    853 
                                                    -
                                                    854  printer->pop_block();
                                                    -
                                                    855 }
                                                    -
                                                    856 
                                                    -
                                                    857 
                                                    -
                                                    858 /****************************************************************************************/
                                                    -
                                                    859 /* Print nrn_state routine */
                                                    -
                                                    860 /****************************************************************************************/
                                                    +
                                                    854  printer->fmt_line("hoc_register_dparam_semantics(mech_type, {}, \"{}\");",
                                                    +
                                                    855  i,
                                                    +
                                                    856  info.semantics[i].name);
                                                    +
                                                    857  }
                                                    +
                                                    858 
                                                    +
                                                    859  printer->pop_block();
                                                    +
                                                    860 }
                                                    861 
                                                    -
                                                    862 
                                                    -
                                                    863 /// TODO: Edit for NEURON
                                                    - -
                                                    865  if (!nrn_state_required()) {
                                                    -
                                                    866  return;
                                                    -
                                                    867  }
                                                    -
                                                    868 
                                                    -
                                                    869  printer->add_newline(2);
                                                    -
                                                    870  print_global_function_common_code(BlockType::State);
                                                    -
                                                    871 
                                                    -
                                                    872  printer->push_block("for (int id = 0; id < nodecount; id++)");
                                                    -
                                                    873 
                                                    -
                                                    874  /**
                                                    -
                                                    875  * \todo Eigen solver node also emits IonCurVar variable in the functor
                                                    -
                                                    876  * but that shouldn't update ions in derivative block
                                                    -
                                                    877  */
                                                    -
                                                    878  if (ion_variable_struct_required()) {
                                                    -
                                                    879  throw std::runtime_error("Not implemented.");
                                                    -
                                                    880  }
                                                    -
                                                    881 
                                                    -
                                                    882  auto read_statements = ion_read_statements(BlockType::State);
                                                    -
                                                    883  for (auto& statement: read_statements) {
                                                    -
                                                    884  printer->add_line(statement);
                                                    -
                                                    885  }
                                                    -
                                                    886 
                                                    -
                                                    887  if (info.nrn_state_block) {
                                                    -
                                                    888  info.nrn_state_block->visit_children(*this);
                                                    -
                                                    889  }
                                                    -
                                                    890 
                                                    -
                                                    891  if (info.currents.empty() && info.breakpoint_node != nullptr) {
                                                    -
                                                    892  auto block = info.breakpoint_node->get_statement_block();
                                                    -
                                                    893  print_statement_block(*block, false, false);
                                                    +
                                                    862 
                                                    + +
                                                    864  auto const value_initialize = print_initializers ? "{}" : "";
                                                    +
                                                    865  auto int_type = default_int_data_type();
                                                    +
                                                    866  printer->add_newline(2);
                                                    +
                                                    867  printer->add_line("/** all mechanism instance variables and global variables */");
                                                    +
                                                    868  printer->fmt_push_block("struct {} ", instance_struct());
                                                    +
                                                    869 
                                                    +
                                                    870  for (auto const& [var, type]: info.neuron_global_variables) {
                                                    +
                                                    871  auto const name = var->get_name();
                                                    +
                                                    872  printer->fmt_line("{}* {}{};",
                                                    +
                                                    873  type,
                                                    +
                                                    874  name,
                                                    +
                                                    875  print_initializers ? fmt::format("{{&coreneuron::{}}}", name)
                                                    +
                                                    876  : std::string{});
                                                    +
                                                    877  }
                                                    +
                                                    878  for (auto& var: codegen_float_variables) {
                                                    +
                                                    879  const auto& name = var->get_name();
                                                    +
                                                    880  printer->fmt_line("double* {}{};", name, value_initialize);
                                                    +
                                                    881  }
                                                    +
                                                    882  for (auto& var: codegen_int_variables) {
                                                    +
                                                    883  const auto& name = var.symbol->get_name();
                                                    +
                                                    884  if (name == naming::POINT_PROCESS_VARIABLE) {
                                                    +
                                                    885  continue;
                                                    +
                                                    886  } else if (var.is_index || var.is_integer) {
                                                    +
                                                    887  auto qualifier = var.is_constant ? "const " : "";
                                                    +
                                                    888  printer->fmt_line("{}{}* const* {}{};", qualifier, int_type, name, value_initialize);
                                                    +
                                                    889  } else {
                                                    +
                                                    890  auto qualifier = var.is_constant ? "const " : "";
                                                    +
                                                    891  auto type = var.is_vdata ? "void*" : default_float_data_type();
                                                    +
                                                    892  printer->fmt_line("{}{}* const* {}{};", qualifier, type, name, value_initialize);
                                                    +
                                                    893  }
                                                    894  }
                                                    895 
                                                    -
                                                    896  const auto& write_statements = ion_write_statements(BlockType::State);
                                                    -
                                                    897  for (auto& statement: write_statements) {
                                                    -
                                                    898  const auto& text = process_shadow_update_statement(statement, BlockType::State);
                                                    -
                                                    899  printer->add_line(text);
                                                    -
                                                    900  }
                                                    -
                                                    901 
                                                    -
                                                    902  printer->pop_block();
                                                    -
                                                    903  printer->pop_block();
                                                    -
                                                    904 }
                                                    -
                                                    905 
                                                    -
                                                    906 
                                                    -
                                                    907 /****************************************************************************************/
                                                    -
                                                    908 /* Print nrn_cur related routines */
                                                    -
                                                    909 /****************************************************************************************/
                                                    -
                                                    910 
                                                    -
                                                    911 
                                                    -
                                                    912 /// TODO: Edit for NEURON
                                                    - -
                                                    914  return;
                                                    -
                                                    915 }
                                                    -
                                                    916 
                                                    -
                                                    917 
                                                    -
                                                    918 /// TODO: Edit for NEURON
                                                    - -
                                                    920  return;
                                                    -
                                                    921 }
                                                    -
                                                    922 
                                                    -
                                                    923 
                                                    -
                                                    924 /// TODO: Edit for NEURON
                                                    - -
                                                    926  return;
                                                    -
                                                    927 }
                                                    -
                                                    928 
                                                    -
                                                    929 
                                                    -
                                                    930 /// TODO: Edit for NEURON
                                                    - -
                                                    932  return;
                                                    -
                                                    933 }
                                                    +
                                                    896  printer->fmt_line("{}* {}{};",
                                                    +
                                                    897  global_struct(),
                                                    + +
                                                    899  print_initializers ? fmt::format("{{&{}}}", global_struct_instance())
                                                    +
                                                    900  : std::string{});
                                                    +
                                                    901  printer->pop_block(";");
                                                    +
                                                    902 }
                                                    +
                                                    903 
                                                    +
                                                    904 
                                                    + +
                                                    906  // read ion statements
                                                    +
                                                    907  auto read_statements = ion_read_statements(BlockType::Initial);
                                                    +
                                                    908  for (auto& statement: read_statements) {
                                                    +
                                                    909  printer->add_line(statement);
                                                    +
                                                    910  }
                                                    +
                                                    911 
                                                    +
                                                    912  // initial block
                                                    +
                                                    913  if (node != nullptr) {
                                                    +
                                                    914  const auto& block = node->get_statement_block();
                                                    +
                                                    915  print_statement_block(*block, false, false);
                                                    +
                                                    916  }
                                                    +
                                                    917 
                                                    +
                                                    918  // write ion statements
                                                    +
                                                    919  auto write_statements = ion_write_statements(BlockType::Initial);
                                                    +
                                                    920  for (auto& statement: write_statements) {
                                                    +
                                                    921  auto text = process_shadow_update_statement(statement, BlockType::Initial);
                                                    +
                                                    922  printer->add_line(text);
                                                    +
                                                    923  }
                                                    +
                                                    924 }
                                                    +
                                                    925 
                                                    +
                                                    926 
                                                    + +
                                                    928  const std::string& function_name) {
                                                    +
                                                    929  std::string method = function_name.empty() ? compute_method_name(type) : function_name;
                                                    +
                                                    930  std::string args =
                                                    +
                                                    931  "_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int "
                                                    +
                                                    932  "_type";
                                                    +
                                                    933  printer->fmt_push_block("void {}({})", method, args);
                                                    934 
                                                    -
                                                    935 
                                                    -
                                                    936 /// TODO: Edit for NEURON
                                                    - -
                                                    938  return;
                                                    -
                                                    939 }
                                                    +
                                                    935  printer->add_line("_nrn_mechanism_cache_range _lmr{_sorted_token, *_nt, *_ml_arg, _type};");
                                                    +
                                                    936  printer->fmt_line("auto inst = make_instance_{}(_lmr);", info.mod_suffix);
                                                    +
                                                    937  printer->add_line("auto nodecount = _ml_arg->nodecount;");
                                                    +
                                                    938 }
                                                    +
                                                    939 
                                                    940 
                                                    -
                                                    941 
                                                    -
                                                    942 /// TODO: Edit for NEURON
                                                    - -
                                                    944  if (!nrn_cur_required()) {
                                                    -
                                                    945  return;
                                                    -
                                                    946  }
                                                    -
                                                    947 
                                                    -
                                                    948  printer->add_newline(2);
                                                    +
                                                    941 void CodegenNeuronCppVisitor::print_nrn_init(bool skip_init_check) {
                                                    +
                                                    942  printer->add_newline(2);
                                                    +
                                                    943 
                                                    +
                                                    944  print_global_function_common_code(BlockType::Initial);
                                                    +
                                                    945 
                                                    +
                                                    946  printer->push_block("for (int id = 0; id < nodecount; id++)");
                                                    +
                                                    947  print_initial_block(info.initial_node);
                                                    +
                                                    948  printer->pop_block();
                                                    949 
                                                    -
                                                    950  printer->fmt_line(
                                                    -
                                                    951  "void {}(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, "
                                                    -
                                                    952  "int _type) {{}}",
                                                    -
                                                    953  method_name(naming::NRN_CUR_METHOD));
                                                    -
                                                    954 
                                                    -
                                                    955  /// TODO: Fill in
                                                    -
                                                    956 }
                                                    -
                                                    957 
                                                    -
                                                    958 
                                                    -
                                                    959 /****************************************************************************************/
                                                    -
                                                    960 /* Main code printing entry points */
                                                    -
                                                    961 /****************************************************************************************/
                                                    +
                                                    950  printer->pop_block();
                                                    +
                                                    951 }
                                                    +
                                                    952 
                                                    + +
                                                    954  printer->add_newline(2);
                                                    +
                                                    955  printer->add_line("/** nrn_jacob function */");
                                                    +
                                                    956 
                                                    +
                                                    957  printer->fmt_line(
                                                    +
                                                    958  "static void {}(_nrn_model_sorted_token const& _sorted_token, NrnThread* "
                                                    +
                                                    959  "_nt, Memb_list* _ml_arg, int _type) {{}}",
                                                    +
                                                    960  method_name(naming::NRN_JACOB_METHOD));
                                                    +
                                                    961 }
                                                    962 
                                                    - -
                                                    964  print_standard_includes();
                                                    -
                                                    965  print_neuron_includes();
                                                    -
                                                    966 }
                                                    -
                                                    967 
                                                    +
                                                    963 
                                                    +
                                                    964 /// TODO: Edit for NEURON
                                                    + +
                                                    966  return;
                                                    +
                                                    967 }
                                                    968 
                                                    - -
                                                    970  print_global_macros();
                                                    -
                                                    971  print_mechanism_variables_macros();
                                                    -
                                                    972 }
                                                    -
                                                    973 
                                                    +
                                                    969 
                                                    +
                                                    970 /// TODO: Edit for NEURON
                                                    + +
                                                    972  return;
                                                    +
                                                    973 }
                                                    974 
                                                    - -
                                                    976  printer->add_newline();
                                                    -
                                                    977  printer->add_line("/* NEURON global macro definitions */");
                                                    -
                                                    978  if (info.vectorize) {
                                                    -
                                                    979  printer->add_multi_line(R"CODE(
                                                    -
                                                    980  /* VECTORIZED */
                                                    -
                                                    981  #define NRN_VECTORIZED 1
                                                    -
                                                    982  )CODE");
                                                    -
                                                    983  } else {
                                                    -
                                                    984  printer->add_multi_line(R"CODE(
                                                    -
                                                    985  /* NOT VECTORIZED */
                                                    -
                                                    986  #define NRN_VECTORIZED 0
                                                    -
                                                    987  )CODE");
                                                    -
                                                    988  }
                                                    -
                                                    989 }
                                                    -
                                                    990 
                                                    -
                                                    991 
                                                    - -
                                                    993  printer->add_newline();
                                                    -
                                                    994  printer->add_line("static constexpr auto number_of_datum_variables = ",
                                                    -
                                                    995  std::to_string(int_variables_size()),
                                                    -
                                                    996  ";");
                                                    -
                                                    997  printer->add_line("static constexpr auto number_of_floating_point_variables = ",
                                                    -
                                                    998  std::to_string(float_variables_size()),
                                                    -
                                                    999  ";");
                                                    -
                                                    1000  printer->add_newline();
                                                    -
                                                    1001  printer->add_multi_line(R"CODE(
                                                    -
                                                    1002  namespace {
                                                    -
                                                    1003  template <typename T>
                                                    -
                                                    1004  using _nrn_mechanism_std_vector = std::vector<T>;
                                                    -
                                                    1005  using _nrn_model_sorted_token = neuron::model_sorted_token;
                                                    -
                                                    1006  using _nrn_mechanism_cache_range = neuron::cache::MechanismRange<number_of_floating_point_variables, number_of_datum_variables>;
                                                    -
                                                    1007  using _nrn_mechanism_cache_instance = neuron::cache::MechanismInstance<number_of_floating_point_variables, number_of_datum_variables>;
                                                    -
                                                    1008  using _nrn_non_owning_id_without_container = neuron::container::non_owning_identifier_without_container;
                                                    -
                                                    1009  template <typename T>
                                                    -
                                                    1010  using _nrn_mechanism_field = neuron::mechanism::field<T>;
                                                    -
                                                    1011  template <typename... Args>
                                                    -
                                                    1012  void _nrn_mechanism_register_data_fields(Args&&... args) {
                                                    -
                                                    1013  neuron::mechanism::register_data_fields(std::forward<Args>(args)...);
                                                    -
                                                    1014  }
                                                    -
                                                    1015  } // namespace
                                                    -
                                                    1016  )CODE");
                                                    -
                                                    1017  /// TODO: More prints here?
                                                    -
                                                    1018 }
                                                    -
                                                    1019 
                                                    -
                                                    1020 
                                                    - -
                                                    1022  print_namespace_start();
                                                    -
                                                    1023 }
                                                    -
                                                    1024 
                                                    -
                                                    1025 
                                                    - -
                                                    1027  print_namespace_stop();
                                                    -
                                                    1028 }
                                                    -
                                                    1029 
                                                    -
                                                    1030 
                                                    -
                                                    1031 void CodegenNeuronCppVisitor::print_data_structures(bool print_initializers) {
                                                    -
                                                    1032  print_mechanism_global_var_structure(print_initializers);
                                                    -
                                                    1033  print_mechanism_range_var_structure(print_initializers);
                                                    -
                                                    1034  print_make_instance();
                                                    -
                                                    1035 }
                                                    -
                                                    1036 
                                                    +
                                                    975 
                                                    +
                                                    976 /// TODO: Print the equivalent of `nrn_alloc_<mech_name>`
                                                    + +
                                                    978  printer->add_newline(2);
                                                    +
                                                    979 
                                                    +
                                                    980  auto method = method_name(naming::NRN_ALLOC_METHOD);
                                                    +
                                                    981  printer->fmt_push_block("static void {}(Prop* _prop)", method);
                                                    +
                                                    982  printer->add_multi_line(R"CODE(
                                                    +
                                                    983  Prop *prop_ion{};
                                                    +
                                                    984  Datum *_ppvar{};
                                                    +
                                                    985  )CODE");
                                                    +
                                                    986 
                                                    +
                                                    987  if (info.point_process) {
                                                    +
                                                    988  printer->push_block("if (nrn_point_prop_)");
                                                    +
                                                    989  printer->add_multi_line(R"CODE(
                                                    +
                                                    990  _nrn_mechanism_access_alloc_seq(_prop) = _nrn_mechanism_access_alloc_seq(nrn_point_prop_);
                                                    +
                                                    991  _ppvar = _nrn_mechanism_access_dparam(nrn_point_prop_);
                                                    +
                                                    992  )CODE");
                                                    +
                                                    993  printer->chain_block("else");
                                                    +
                                                    994  }
                                                    +
                                                    995  if (info.semantic_variable_count) {
                                                    +
                                                    996  printer->fmt_line("_ppvar = nrn_prop_datum_alloc(mech_type, {}, _prop);",
                                                    +
                                                    997  info.semantic_variable_count);
                                                    +
                                                    998  printer->add_line("_nrn_mechanism_access_dparam(_prop) = _ppvar;");
                                                    +
                                                    999  }
                                                    +
                                                    1000  printer->add_multi_line(R"CODE(
                                                    +
                                                    1001  _nrn_mechanism_cache_instance _ml_real{_prop};
                                                    +
                                                    1002  auto* const _ml = &_ml_real;
                                                    +
                                                    1003  size_t const _iml{};
                                                    +
                                                    1004  )CODE");
                                                    +
                                                    1005  printer->fmt_line("assert(_nrn_mechanism_get_num_vars(_prop) == {});",
                                                    +
                                                    1006  codegen_float_variables.size());
                                                    +
                                                    1007  if (float_variables_size()) {
                                                    +
                                                    1008  printer->add_line("/*initialize range parameters*/");
                                                    +
                                                    1009  for (const auto& var: info.range_parameter_vars) {
                                                    +
                                                    1010  if (var->is_array()) {
                                                    +
                                                    1011  continue;
                                                    +
                                                    1012  }
                                                    +
                                                    1013  const auto& var_name = var->get_name();
                                                    +
                                                    1014  printer->fmt_line("_ml->template fpfield<{}>(_iml) = {}; /* {} */",
                                                    +
                                                    1015  position_of_float_var(var_name),
                                                    +
                                                    1016  *var->get_value(),
                                                    +
                                                    1017  var_name);
                                                    +
                                                    1018  }
                                                    +
                                                    1019  }
                                                    +
                                                    1020  if (info.point_process) {
                                                    +
                                                    1021  printer->pop_block();
                                                    +
                                                    1022  }
                                                    +
                                                    1023 
                                                    +
                                                    1024  if (info.semantic_variable_count) {
                                                    +
                                                    1025  printer->add_line("_nrn_mechanism_access_dparam(_prop) = _ppvar;");
                                                    +
                                                    1026  }
                                                    +
                                                    1027 
                                                    +
                                                    1028  if (info.diam_used) {
                                                    +
                                                    1029  throw std::runtime_error("Diam allocation not implemented.");
                                                    +
                                                    1030  }
                                                    +
                                                    1031 
                                                    +
                                                    1032  if (info.area_used) {
                                                    +
                                                    1033  throw std::runtime_error("Area allocation not implemented.");
                                                    +
                                                    1034  }
                                                    +
                                                    1035 
                                                    +
                                                    1036  const auto codegen_int_variables_size = codegen_int_variables.size();
                                                    1037 
                                                    - -
                                                    1039  if (!info.vectorize) {
                                                    -
                                                    1040  return;
                                                    -
                                                    1041  }
                                                    -
                                                    1042  printer->add_multi_line(R"CODE(
                                                    -
                                                    1043  #if NRN_PRCELLSTATE
                                                    -
                                                    1044  inst->v_unused[id] = v;
                                                    -
                                                    1045  #endif
                                                    -
                                                    1046  )CODE");
                                                    -
                                                    1047 }
                                                    -
                                                    1048 
                                                    -
                                                    1049 
                                                    - -
                                                    1051  printer->add_multi_line(R"CODE(
                                                    -
                                                    1052  #if NRN_PRCELLSTATE
                                                    -
                                                    1053  inst->g_unused[id] = g;
                                                    -
                                                    1054  #endif
                                                    -
                                                    1055  )CODE");
                                                    -
                                                    1056 }
                                                    -
                                                    1057 
                                                    -
                                                    1058 
                                                    -
                                                    1059 /// TODO: Edit for NEURON
                                                    - -
                                                    1061  print_nrn_init();
                                                    -
                                                    1062  print_nrn_cur();
                                                    -
                                                    1063  print_nrn_state();
                                                    -
                                                    1064  print_nrn_jacob();
                                                    +
                                                    1038  for (const auto& ion: info.ions) {
                                                    +
                                                    1039  printer->fmt_line("Symbol * {}_sym = hoc_lookup(\"{}_ion\");", ion.name, ion.name);
                                                    +
                                                    1040  printer->fmt_line("Prop * {}_prop = need_memb({}_sym);", ion.name, ion.name);
                                                    +
                                                    1041 
                                                    +
                                                    1042  for (size_t i = 0; i < codegen_int_variables_size; ++i) {
                                                    +
                                                    1043  const auto& var = codegen_int_variables[i];
                                                    +
                                                    1044 
                                                    +
                                                    1045  // if(var.symbol->has_any_property(NmodlType::useion)) {
                                                    +
                                                    1046  const std::string& var_name = var.symbol->get_name();
                                                    +
                                                    1047  if (var_name.rfind("ion_", 0) != 0) {
                                                    +
                                                    1048  continue;
                                                    +
                                                    1049  }
                                                    +
                                                    1050 
                                                    +
                                                    1051  std::string ion_var_name = std::string(var_name.begin() + 4, var_name.end());
                                                    +
                                                    1052  if (ion.is_ionic_variable(ion_var_name)) {
                                                    +
                                                    1053  printer->fmt_line("_ppvar[{}] = _nrn_mechanism_get_param_handle({}_prop, {});",
                                                    +
                                                    1054  i,
                                                    +
                                                    1055  ion.name,
                                                    +
                                                    1056  ion.variable_index(ion_var_name));
                                                    +
                                                    1057  }
                                                    +
                                                    1058  //}
                                                    +
                                                    1059  }
                                                    +
                                                    1060  }
                                                    +
                                                    1061 
                                                    +
                                                    1062  /// TODO: CONSTRUCTOR call
                                                    +
                                                    1063 
                                                    +
                                                    1064  printer->pop_block();
                                                    1065 }
                                                    1066 
                                                    -
                                                    1067 
                                                    -
                                                    1068 /// TODO: Edit for NEURON
                                                    - -
                                                    1070  print_backend_info();
                                                    -
                                                    1071  print_headers_include();
                                                    -
                                                    1072  print_macro_definitions();
                                                    -
                                                    1073  print_namespace_begin();
                                                    -
                                                    1074  print_nmodl_constants();
                                                    -
                                                    1075  print_prcellstate_macros();
                                                    -
                                                    1076  print_mechanism_info();
                                                    -
                                                    1077  print_data_structures(true);
                                                    -
                                                    1078  print_nrn_alloc();
                                                    -
                                                    1079  print_global_variables_for_hoc();
                                                    -
                                                    1080  print_compute_functions(); // only nrn_cur and nrn_state
                                                    -
                                                    1081  print_sdlists_init(true);
                                                    -
                                                    1082  print_mechanism_register();
                                                    -
                                                    1083  print_namespace_end();
                                                    -
                                                    1084 }
                                                    -
                                                    1085 
                                                    - -
                                                    1087  throw std::runtime_error("Not implemented.");
                                                    -
                                                    1088 }
                                                    -
                                                    1089 
                                                    - -
                                                    1091  throw std::runtime_error("Not implemented.");
                                                    -
                                                    1092 }
                                                    -
                                                    1093 
                                                    - -
                                                    1095  throw std::runtime_error("Not implemented.");
                                                    -
                                                    1096 }
                                                    -
                                                    1097 
                                                    -
                                                    1098 
                                                    -
                                                    1099 /****************************************************************************************/
                                                    -
                                                    1100 /* Overloaded visitor routines */
                                                    -
                                                    1101 /****************************************************************************************/
                                                    -
                                                    1102 
                                                    -
                                                    1103 /// TODO: Edit for NEURON
                                                    - -
                                                    1105  return;
                                                    -
                                                    1106 }
                                                    -
                                                    1107 
                                                    -
                                                    1108 
                                                    -
                                                    1109 } // namespace codegen
                                                    -
                                                    1110 } // namespace nmodl
                                                    +
                                                    1067 
                                                    +
                                                    1068 /****************************************************************************************/
                                                    +
                                                    1069 /* Print nrn_state routine */
                                                    +
                                                    1070 /****************************************************************************************/
                                                    +
                                                    1071 
                                                    +
                                                    1072 
                                                    +
                                                    1073 /// TODO: Edit for NEURON
                                                    + +
                                                    1075  if (!nrn_state_required()) {
                                                    +
                                                    1076  return;
                                                    +
                                                    1077  }
                                                    +
                                                    1078 
                                                    +
                                                    1079  printer->add_newline(2);
                                                    +
                                                    1080  print_global_function_common_code(BlockType::State);
                                                    +
                                                    1081 
                                                    +
                                                    1082  printer->push_block("for (int id = 0; id < nodecount; id++)");
                                                    +
                                                    1083 
                                                    +
                                                    1084  /**
                                                    +
                                                    1085  * \todo Eigen solver node also emits IonCurVar variable in the functor
                                                    +
                                                    1086  * but that shouldn't update ions in derivative block
                                                    +
                                                    1087  */
                                                    +
                                                    1088  if (ion_variable_struct_required()) {
                                                    +
                                                    1089  throw std::runtime_error("Not implemented.");
                                                    +
                                                    1090  }
                                                    +
                                                    1091 
                                                    +
                                                    1092  auto read_statements = ion_read_statements(BlockType::State);
                                                    +
                                                    1093  for (auto& statement: read_statements) {
                                                    +
                                                    1094  printer->add_line(statement);
                                                    +
                                                    1095  }
                                                    +
                                                    1096 
                                                    +
                                                    1097  if (info.nrn_state_block) {
                                                    +
                                                    1098  info.nrn_state_block->visit_children(*this);
                                                    +
                                                    1099  }
                                                    +
                                                    1100 
                                                    +
                                                    1101  if (info.currents.empty() && info.breakpoint_node != nullptr) {
                                                    +
                                                    1102  auto block = info.breakpoint_node->get_statement_block();
                                                    +
                                                    1103  print_statement_block(*block, false, false);
                                                    +
                                                    1104  }
                                                    +
                                                    1105 
                                                    +
                                                    1106  const auto& write_statements = ion_write_statements(BlockType::State);
                                                    +
                                                    1107  for (auto& statement: write_statements) {
                                                    +
                                                    1108  const auto& text = process_shadow_update_statement(statement, BlockType::State);
                                                    +
                                                    1109  printer->add_line(text);
                                                    +
                                                    1110  }
                                                    +
                                                    1111 
                                                    +
                                                    1112  printer->pop_block();
                                                    +
                                                    1113  printer->pop_block();
                                                    +
                                                    1114 }
                                                    +
                                                    1115 
                                                    +
                                                    1116 
                                                    +
                                                    1117 /****************************************************************************************/
                                                    +
                                                    1118 /* Print nrn_cur related routines */
                                                    +
                                                    1119 /****************************************************************************************/
                                                    +
                                                    1120 
                                                    +
                                                    1121 
                                                    +
                                                    1122 /// TODO: Edit for NEURON
                                                    + +
                                                    1124  return;
                                                    +
                                                    1125 }
                                                    +
                                                    1126 
                                                    +
                                                    1127 
                                                    +
                                                    1128 /// TODO: Edit for NEURON
                                                    + +
                                                    1130  return;
                                                    +
                                                    1131 }
                                                    +
                                                    1132 
                                                    +
                                                    1133 
                                                    +
                                                    1134 /// TODO: Edit for NEURON
                                                    + +
                                                    1136  return;
                                                    +
                                                    1137 }
                                                    +
                                                    1138 
                                                    +
                                                    1139 
                                                    +
                                                    1140 /// TODO: Edit for NEURON
                                                    + +
                                                    1142  return;
                                                    +
                                                    1143 }
                                                    +
                                                    1144 
                                                    +
                                                    1145 
                                                    +
                                                    1146 /// TODO: Edit for NEURON
                                                    + +
                                                    1148  return;
                                                    +
                                                    1149 }
                                                    +
                                                    1150 
                                                    +
                                                    1151 
                                                    +
                                                    1152 /// TODO: Edit for NEURON
                                                    + +
                                                    1154  if (!nrn_cur_required()) {
                                                    +
                                                    1155  return;
                                                    +
                                                    1156  }
                                                    +
                                                    1157 
                                                    +
                                                    1158  printer->add_newline(2);
                                                    +
                                                    1159 
                                                    +
                                                    1160  printer->fmt_line(
                                                    +
                                                    1161  "void {}(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, "
                                                    +
                                                    1162  "int _type) {{}}",
                                                    +
                                                    1163  method_name(naming::NRN_CUR_METHOD));
                                                    +
                                                    1164 
                                                    +
                                                    1165  /// TODO: Fill in
                                                    +
                                                    1166 }
                                                    +
                                                    1167 
                                                    +
                                                    1168 
                                                    +
                                                    1169 /****************************************************************************************/
                                                    +
                                                    1170 /* Main code printing entry points */
                                                    +
                                                    1171 /****************************************************************************************/
                                                    +
                                                    1172 
                                                    + +
                                                    1174  print_standard_includes();
                                                    +
                                                    1175  print_neuron_includes();
                                                    +
                                                    1176 }
                                                    +
                                                    1177 
                                                    +
                                                    1178 
                                                    + +
                                                    1180  print_global_macros();
                                                    +
                                                    1181  print_mechanism_variables_macros();
                                                    +
                                                    1182 }
                                                    +
                                                    1183 
                                                    +
                                                    1184 
                                                    + +
                                                    1186  printer->add_newline();
                                                    +
                                                    1187  printer->add_line("/* NEURON global macro definitions */");
                                                    +
                                                    1188  if (info.vectorize) {
                                                    +
                                                    1189  printer->add_multi_line(R"CODE(
                                                    +
                                                    1190  /* VECTORIZED */
                                                    +
                                                    1191  #define NRN_VECTORIZED 1
                                                    +
                                                    1192  )CODE");
                                                    +
                                                    1193  } else {
                                                    +
                                                    1194  printer->add_multi_line(R"CODE(
                                                    +
                                                    1195  /* NOT VECTORIZED */
                                                    +
                                                    1196  #define NRN_VECTORIZED 0
                                                    +
                                                    1197  )CODE");
                                                    +
                                                    1198  }
                                                    +
                                                    1199 }
                                                    +
                                                    1200 
                                                    +
                                                    1201 
                                                    + +
                                                    1203  printer->add_newline();
                                                    +
                                                    1204  printer->add_line("static constexpr auto number_of_datum_variables = ",
                                                    +
                                                    1205  std::to_string(int_variables_size()),
                                                    +
                                                    1206  ";");
                                                    +
                                                    1207  printer->add_line("static constexpr auto number_of_floating_point_variables = ",
                                                    +
                                                    1208  std::to_string(float_variables_size()),
                                                    +
                                                    1209  ";");
                                                    +
                                                    1210  printer->add_newline();
                                                    +
                                                    1211  printer->add_multi_line(R"CODE(
                                                    +
                                                    1212  namespace {
                                                    +
                                                    1213  template <typename T>
                                                    +
                                                    1214  using _nrn_mechanism_std_vector = std::vector<T>;
                                                    +
                                                    1215  using _nrn_model_sorted_token = neuron::model_sorted_token;
                                                    +
                                                    1216  using _nrn_mechanism_cache_range = neuron::cache::MechanismRange<number_of_floating_point_variables, number_of_datum_variables>;
                                                    +
                                                    1217  using _nrn_mechanism_cache_instance = neuron::cache::MechanismInstance<number_of_floating_point_variables, number_of_datum_variables>;
                                                    +
                                                    1218  using _nrn_non_owning_id_without_container = neuron::container::non_owning_identifier_without_container;
                                                    +
                                                    1219  template <typename T>
                                                    +
                                                    1220  using _nrn_mechanism_field = neuron::mechanism::field<T>;
                                                    +
                                                    1221  template <typename... Args>
                                                    +
                                                    1222  void _nrn_mechanism_register_data_fields(Args&&... args) {
                                                    +
                                                    1223  neuron::mechanism::register_data_fields(std::forward<Args>(args)...);
                                                    +
                                                    1224  }
                                                    +
                                                    1225  } // namespace
                                                    +
                                                    1226  )CODE");
                                                    +
                                                    1227 
                                                    +
                                                    1228  if (info.point_process) {
                                                    +
                                                    1229  printer->add_line("extern Prop* nrn_point_prop_;");
                                                    +
                                                    1230  }
                                                    +
                                                    1231  /// TODO: More prints here?
                                                    +
                                                    1232 }
                                                    +
                                                    1233 
                                                    +
                                                    1234 
                                                    + +
                                                    1236  print_namespace_start();
                                                    +
                                                    1237 }
                                                    +
                                                    1238 
                                                    +
                                                    1239 
                                                    + +
                                                    1241  print_namespace_stop();
                                                    +
                                                    1242 }
                                                    +
                                                    1243 
                                                    +
                                                    1244 
                                                    +
                                                    1245 void CodegenNeuronCppVisitor::print_data_structures(bool print_initializers) {
                                                    +
                                                    1246  print_mechanism_global_var_structure(print_initializers);
                                                    +
                                                    1247  print_mechanism_range_var_structure(print_initializers);
                                                    +
                                                    1248  print_make_instance();
                                                    +
                                                    1249 }
                                                    +
                                                    1250 
                                                    +
                                                    1251 
                                                    + +
                                                    1253  if (!info.vectorize) {
                                                    +
                                                    1254  return;
                                                    +
                                                    1255  }
                                                    +
                                                    1256  printer->add_multi_line(R"CODE(
                                                    +
                                                    1257  #if NRN_PRCELLSTATE
                                                    +
                                                    1258  inst->v_unused[id] = v;
                                                    +
                                                    1259  #endif
                                                    +
                                                    1260  )CODE");
                                                    +
                                                    1261 }
                                                    +
                                                    1262 
                                                    +
                                                    1263 
                                                    + +
                                                    1265  printer->add_multi_line(R"CODE(
                                                    +
                                                    1266  #if NRN_PRCELLSTATE
                                                    +
                                                    1267  inst->g_unused[id] = g;
                                                    +
                                                    1268  #endif
                                                    +
                                                    1269  )CODE");
                                                    +
                                                    1270 }
                                                    +
                                                    1271 
                                                    +
                                                    1272 
                                                    +
                                                    1273 /// TODO: Edit for NEURON
                                                    + +
                                                    1275  print_nrn_init();
                                                    +
                                                    1276  print_nrn_cur();
                                                    +
                                                    1277  print_nrn_state();
                                                    +
                                                    1278  print_nrn_jacob();
                                                    +
                                                    1279 }
                                                    +
                                                    1280 
                                                    +
                                                    1281 
                                                    +
                                                    1282 /// TODO: Edit for NEURON
                                                    + +
                                                    1284  print_backend_info();
                                                    +
                                                    1285  print_headers_include();
                                                    +
                                                    1286  print_macro_definitions();
                                                    +
                                                    1287  print_namespace_begin();
                                                    +
                                                    1288  print_nmodl_constants();
                                                    +
                                                    1289  print_prcellstate_macros();
                                                    +
                                                    1290  print_mechanism_info();
                                                    +
                                                    1291  print_data_structures(true);
                                                    +
                                                    1292  print_nrn_alloc();
                                                    +
                                                    1293  print_function_prototypes();
                                                    +
                                                    1294  print_global_variables_for_hoc();
                                                    +
                                                    1295  print_compute_functions(); // only nrn_cur and nrn_state
                                                    +
                                                    1296  print_sdlists_init(true);
                                                    +
                                                    1297  print_mechanism_register();
                                                    +
                                                    1298  print_namespace_end();
                                                    +
                                                    1299 }
                                                    +
                                                    1300 
                                                    + +
                                                    1302  throw std::runtime_error("Not implemented.");
                                                    +
                                                    1303 }
                                                    +
                                                    1304 
                                                    + +
                                                    1306  throw std::runtime_error("Not implemented.");
                                                    +
                                                    1307 }
                                                    +
                                                    1308 
                                                    + +
                                                    1310  throw std::runtime_error("Not implemented.");
                                                    +
                                                    1311 }
                                                    +
                                                    1312 
                                                    +
                                                    1313 
                                                    +
                                                    1314 /****************************************************************************************/
                                                    +
                                                    1315 /* Overloaded visitor routines */
                                                    +
                                                    1316 /****************************************************************************************/
                                                    +
                                                    1317 
                                                    +
                                                    1318 /// TODO: Edit for NEURON
                                                    + +
                                                    1320  return;
                                                    +
                                                    1321 }
                                                    +
                                                    1322 
                                                    +
                                                    1323 
                                                    +
                                                    1324 } // namespace codegen
                                                    +
                                                    1325 } // namespace nmodl
                                                    -
                                                    const char * external_method_parameters(bool table=false) noexcept override
                                                    Parameters for functions in generated code that are called back from external code.
                                                    -
                                                    void print_nrn_destructor() override
                                                    Print nrn_destructor function definition.
                                                    +
                                                    const char * external_method_parameters(bool table=false) noexcept override
                                                    Parameters for functions in generated code that are called back from external code.
                                                    +
                                                    void print_nrn_destructor() override
                                                    Print nrn_destructor function definition.
                                                    bool is_index
                                                    if this is pure index (e.g.
                                                    -
                                                    void print_nrn_cur_non_conductance_kernel() override
                                                    Print the nrn_cur kernel without NMODL conductance keyword provisions.
                                                    +
                                                    void print_nrn_cur_non_conductance_kernel() override
                                                    Print the nrn_cur kernel without NMODL conductance keyword provisions.
                                                    Helper to represent information about index/int variables.
                                                    -
                                                    void print_nrn_cur() override
                                                    Print nrn_cur / current update function definition.
                                                    -
                                                    void print_macro_definitions()
                                                    Print all NEURON macros.
                                                    +
                                                    void print_nrn_cur() override
                                                    Print nrn_cur / current update function definition.
                                                    +
                                                    void print_macro_definitions()
                                                    Print all NEURON macros.
                                                    -
                                                    void print_net_event_call(const ast::FunctionCall &node) override
                                                    Print call to net_event.
                                                    -
                                                    void print_neuron_includes()
                                                    Print includes from NEURON.
                                                    +
                                                    void print_net_event_call(const ast::FunctionCall &node) override
                                                    Print call to net_event.
                                                    +
                                                    static constexpr char POINT_PROCESS_VARIABLE[]
                                                    inbuilt neuron variable for point process
                                                    +
                                                    void print_neuron_includes()
                                                    Print includes from NEURON.
                                                    static constexpr char NRN_JACOB_METHOD[]
                                                    nrn_jacob method in generated code
                                                    -
                                                    void print_nrn_init(bool skip_init_check=true)
                                                    Print the nrn_init function definition.
                                                    -
                                                    std::string internal_method_arguments() override
                                                    Arguments for functions that are defined and used internally.
                                                    +
                                                    void print_nrn_init(bool skip_init_check=true)
                                                    Print the nrn_init function definition.
                                                    +
                                                    std::string internal_method_arguments() override
                                                    Arguments for functions that are defined and used internally.
                                                    std::shared_ptr< symtab::Symbol > SymbolType
                                                    -
                                                    void print_nrn_alloc() override
                                                    Print nrn_alloc function definition.
                                                    -
                                                    std::string register_mechanism_arguments() const override
                                                    Arguments for register_mech or point_register_mech function.
                                                    +
                                                    void print_nrn_alloc() override
                                                    Print nrn_alloc function definition.
                                                    +
                                                    std::string register_mechanism_arguments() const override
                                                    Arguments for register_mech or point_register_mech function.
                                                    int position_of_int_var(const std::string &name) const override
                                                    Determine the position in the data array for a given int variable.
                                                    bool optimize_ion_variable_copies() const override
                                                    Check if ion variable copies should be avoided.
                                                    -
                                                    ParamVector internal_method_parameters() override
                                                    Parameters for internally defined functions.
                                                    +
                                                    ParamVector internal_method_parameters() override
                                                    Parameters for internally defined functions.
                                                    encapsulates code generation backend implementations
                                                    Definition: ast_common.hpp:26
                                                    std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
                                                    Getter for member variable InitialBlock::statement_block.
                                                    -
                                                    std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const override
                                                    Determine the variable name for a global variable given its symbol.
                                                    -
                                                    std::string nrn_thread_internal_arguments() override
                                                    Arguments for "_threadargs_" macro in neuron implementation.
                                                    +
                                                    std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const override
                                                    Determine the variable name for a global variable given its symbol.
                                                    +
                                                    std::string nrn_thread_internal_arguments() override
                                                    Arguments for "_threadargs_" macro in neuron implementation.
                                                    Visitor for printing C++ code compatible with legacy api of NEURON
                                                    virtual std::string backend_name() const override
                                                    Name of the code generation backend.
                                                    -
                                                    std::string process_verbatim_text(std::string const &text) override
                                                    Process a verbatim block for possible variable renaming.
                                                    +
                                                    std::string process_verbatim_text(std::string const &text) override
                                                    Process a verbatim block for possible variable renaming.
                                                    static constexpr char NTHREAD_DT_VARIABLE[]
                                                    dt variable in neuron thread structure
                                                    -
                                                    void print_g_unused() const override
                                                    Set g_unused (conductance) for NRN_PRCELLSTATE feature.
                                                    -
                                                    virtual void visit_watch_statement(const ast::WatchStatement &node) override
                                                    TODO: Edit for NEURON.
                                                    -
                                                    void print_net_send_call(const ast::FunctionCall &node) override
                                                    Print call to net_send.
                                                    +
                                                    void print_g_unused() const override
                                                    Set g_unused (conductance) for NRN_PRCELLSTATE feature.
                                                    +
                                                    virtual void visit_watch_statement(const ast::WatchStatement &node) override
                                                    TODO: Edit for NEURON.
                                                    +
                                                    void print_net_send_call(const ast::FunctionCall &node) override
                                                    Print call to net_send.
                                                    Implement string manipulation functions.
                                                    -
                                                    void print_namespace_end() override
                                                    Print end of namespaces.
                                                    -
                                                    void print_net_move_call(const ast::FunctionCall &node) override
                                                    Print call to net_move.
                                                    -
                                                    void print_nrn_state() override
                                                    Print nrn_state / state update function definition.
                                                    +
                                                    void print_namespace_end() override
                                                    Print end of namespaces.
                                                    +
                                                    void print_net_move_call(const ast::FunctionCall &node) override
                                                    Print call to net_move.
                                                    +
                                                    void print_nrn_state() override
                                                    Print nrn_state / state update function definition.
                                                    static constexpr char NRN_ALLOC_METHOD[]
                                                    nrn_alloc method in generated code
                                                    static const std::string GIT_REVISION
                                                    git revision id
                                                    Definition: config.h:33
                                                    -
                                                    void print_initial_block(const ast::InitialBlock *node)
                                                    Print the initial block.
                                                    +
                                                    void print_initial_block(const ast::InitialBlock *node)
                                                    Print the initial block.
                                                    bool is_integer
                                                    if this is an integer (e.g.
                                                    -
                                                    virtual void print_global_function_common_code(BlockType type, const std::string &function_name="") override
                                                    Print common code for global functions like nrn_init, nrn_cur and nrn_state.
                                                    -
                                                    std::string float_variable_name(const SymbolType &symbol, bool use_instance) const override
                                                    Determine the name of a float variable given its symbol.
                                                    -
                                                    void print_function(const ast::FunctionBlock &node) override
                                                    Print NMODL function in target backend code.
                                                    -
                                                    void print_v_unused() const override
                                                    Set v_unused (voltage) for NRN_PRCELLSTATE feature.
                                                    +
                                                    virtual void print_global_function_common_code(BlockType type, const std::string &function_name="") override
                                                    Print common code for global functions like nrn_init, nrn_cur and nrn_state.
                                                    +
                                                    std::string float_variable_name(const SymbolType &symbol, bool use_instance) const override
                                                    Determine the name of a float variable given its symbol.
                                                    +
                                                    void print_function(const ast::FunctionBlock &node) override
                                                    Print NMODL function in target backend code.
                                                    +
                                                    void print_v_unused() const override
                                                    Set v_unused (voltage) for NRN_PRCELLSTATE feature.
                                                    Base class for all block scoped nodes.
                                                    Definition: block.hpp:41
                                                    Represents a INITIAL block in the NMODL.
                                                    static std::string trim(std::string text)
                                                    +
                                                    void print_point_process_function_definitions()
                                                    Print POINT_PROCESS related functions Wrap external NEURON functions related to POINT_PROCESS mechani...
                                                    Utility functions for visitors implementation.
                                                    static constexpr char USE_TABLE_VARIABLE[]
                                                    global variable to indicate if table is used
                                                    Represent WATCH statement in NMODL.
                                                    Represents a BREAKPOINT block in NMODL.
                                                    -
                                                    void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
                                                    Print the nrn_cur kernel with NMODL conductance keyword provisions.
                                                    -
                                                    std::string int_variable_name(const IndexVariableInfo &symbol, const std::string &name, bool use_instance) const override
                                                    Determine the name of an int variable given its symbol.
                                                    -
                                                    void print_namespace_begin() override
                                                    Print start of namespaces.
                                                    +
                                                    void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
                                                    Print the nrn_cur kernel with NMODL conductance keyword provisions.
                                                    +
                                                    std::string int_variable_name(const IndexVariableInfo &symbol, const std::string &name, bool use_instance) const override
                                                    Determine the name of an int variable given its symbol.
                                                    +
                                                    void print_namespace_begin() override
                                                    Print start of namespaces.
                                                    -
                                                    void print_global_variables_for_hoc() override
                                                    Print byte arrays that register scalar and vector variables for hoc interface.
                                                    -
                                                    void print_standard_includes() override
                                                    Print standard C/C++ includes.
                                                    -
                                                    void print_mechanism_range_var_structure(bool print_initializers) override
                                                    Print the structure that wraps all range and int variables required for the NMODL.
                                                    -
                                                    virtual void print_procedure(const ast::ProcedureBlock &node) override
                                                    Print NMODL procedure in target backend code.
                                                    -
                                                    void print_namespace_start() override
                                                    Prints the start of the neuron namespace.
                                                    -
                                                    void print_backend_info() override
                                                    Print top file header printed in generated code.
                                                    +
                                                    void print_global_variables_for_hoc() override
                                                    Print byte arrays that register scalar and vector variables for hoc interface.
                                                    +
                                                    void print_standard_includes() override
                                                    Print standard C/C++ includes.
                                                    +
                                                    void print_mechanism_range_var_structure(bool print_initializers) override
                                                    Print the structure that wraps all range and int variables required for the NMODL.
                                                    +
                                                    virtual void print_procedure(const ast::ProcedureBlock &node) override
                                                    Print NMODL procedure in target backend code.
                                                    +
                                                    void print_namespace_start() override
                                                    Prints the start of the neuron namespace.
                                                    +
                                                    void print_backend_info() override
                                                    Print top file header printed in generated code.
                                                    std::string to_string(const T &obj)
                                                    -
                                                    virtual void print_compute_functions() override
                                                    Print all compute functions for every backend.
                                                    +
                                                    virtual void print_compute_functions() override
                                                    Print all compute functions for every backend.
                                                    static constexpr char NRN_INIT_METHOD[]
                                                    nrn_init method in generated code
                                                    -
                                                    void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
                                                    Print main body of nrn_cur function.
                                                    +
                                                    void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
                                                    Print main body of nrn_cur function.
                                                    static constexpr char NRN_CUR_METHOD[]
                                                    nrn_cur method in generated code
                                                    -
                                                    std::string conc_write_statement(const std::string &ion_name, const std::string &concentration, int index) override
                                                    Generate Function call statement for nrn_wrote_conc.
                                                    -
                                                    void print_mechanism_register() override
                                                    Print the mechanism registration function.
                                                    +
                                                    std::string conc_write_statement(const std::string &ion_name, const std::string &concentration, int index) override
                                                    Generate Function call statement for nrn_wrote_conc.
                                                    +
                                                    void print_mechanism_register() override
                                                    Print the mechanism registration function.
                                                    Implement utility functions for codegen visitors.
                                                    -
                                                    void print_nrn_jacob()
                                                    Print nrn_jacob function definition.
                                                    -
                                                    virtual void print_fast_imem_calculation() override
                                                    Print fast membrane current calculation code.
                                                    -
                                                    void print_data_structures(bool print_initializers) override
                                                    Print all classes.
                                                    -
                                                    void print_sdlists_init(bool print_initializers) override
                                                    +
                                                    void print_nrn_jacob()
                                                    Print nrn_jacob function definition.
                                                    +
                                                    virtual void print_fast_imem_calculation() override
                                                    Print fast membrane current calculation code.
                                                    +
                                                    void print_data_structures(bool print_initializers) override
                                                    Print all classes.
                                                    +
                                                    void print_sdlists_init(bool print_initializers) override
                                                    static constexpr char INST_GLOBAL_MEMBER[]
                                                    instance struct member pointing to the global variable structure
                                                    -
                                                    void print_make_instance() const
                                                    Print make_*_instance.
                                                    +
                                                    void print_make_instance() const
                                                    Print make_*_instance.
                                                    virtual void print_atomic_reduction_pragma() override
                                                    Print atomic update pragma for reduction statements.
                                                    NmodlType
                                                    NMODL variable properties.
                                                    -
                                                    void print_namespace_stop() override
                                                    Prints the end of the neuron namespace.
                                                    +
                                                    void print_namespace_stop() override
                                                    Prints the end of the neuron namespace.
                                                    +
                                                    void print_setdata_functions()
                                                    Print NEURON functions related to setting global variables of the mechanism.
                                                    -
                                                    void print_mechanism_variables_macros()
                                                    Print mechanism variables' related macros.
                                                    -
                                                    void print_nrn_constructor() override
                                                    Print nrn_constructor function definition.
                                                    +
                                                    void print_mechanism_variables_macros()
                                                    Print mechanism variables' related macros.
                                                    +
                                                    void print_nrn_constructor() override
                                                    Print nrn_constructor function definition.
                                                    static const std::string NMODL_VERSION
                                                    project tagged version in the cmake
                                                    Definition: config.h:36
                                                    BlockType
                                                    Helper to represent various block types.
                                                    -
                                                    void print_function_or_procedure(const ast::Block &node, const std::string &name) override
                                                    Print nmodl function or procedure (common code)
                                                    -
                                                    void print_headers_include() override
                                                    Print all includes.
                                                    +
                                                    void print_function_or_procedure(const ast::Block &node, const std::string &name) override
                                                    Print nmodl function or procedure (common code)
                                                    +
                                                    void print_headers_include() override
                                                    Print all includes.
                                                    static constexpr char NRN_STATE_METHOD[]
                                                    nrn_state method in generated code
                                                    Version information and units file path.
                                                    -
                                                    void print_nrn_current(const ast::BreakpointBlock &node) override
                                                    Print the nrn_current kernel.
                                                    +
                                                    void print_nrn_current(const ast::BreakpointBlock &node) override
                                                    Print the nrn_current kernel.
                                                    int position_of_float_var(const std::string &name) const override
                                                    Determine the position in the data array for a given float variable.
                                                    -
                                                    std::string get_variable_name(const std::string &name, bool use_instance=true) const override
                                                    Determine variable name in the structure of mechanism properties.
                                                    +
                                                    std::string get_variable_name(const std::string &name, bool use_instance=true) const override
                                                    Determine variable name in the structure of mechanism properties.
                                                    std::string simulator_name() override
                                                    Name of the simulator the code was generated for.
                                                    -
                                                    void print_function_procedure_helper(const ast::Block &node) override
                                                    Common helper function to help printing function or procedure blocks.
                                                    +
                                                    void print_function_procedure_helper(const ast::Block &node) override
                                                    Common helper function to help printing function or procedure blocks.
                                                    static constexpr char NTHREAD_T_VARIABLE[]
                                                    t variable in neuron thread structure
                                                    -
                                                    const char * external_method_arguments() noexcept override
                                                    Arguments for external functions called from generated code.
                                                    +
                                                    const char * external_method_arguments() noexcept override
                                                    Arguments for external functions called from generated code.
                                                    @ State
                                                    derivative block
                                                    -
                                                    std::string nrn_thread_arguments() const override
                                                    Arguments for "_threadargs_" macro in neuron implementation.
                                                    -
                                                    void print_codegen_routines() override
                                                    Print entry point to code generation.
                                                    +
                                                    std::string nrn_thread_arguments() const override
                                                    Arguments for "_threadargs_" macro in neuron implementation.
                                                    +
                                                    void print_codegen_routines() override
                                                    Print entry point to code generation.
                                                    static constexpr char NRN_POINTERINDEX[]
                                                    hoc_nrnpointerindex name
                                                    Auto generated AST classes declaration.
                                                    -
                                                    void print_function_prototypes() override
                                                    Print function and procedures prototype declaration.
                                                    -
                                                    void print_mechanism_global_var_structure(bool print_initializers) override
                                                    Print the structure that wraps all global variables used in the NMODL.
                                                    -
                                                    void print_global_macros()
                                                    Print NEURON global variable macros.
                                                    +
                                                    void print_function_prototypes() override
                                                    Print function and procedures prototype declaration.
                                                    +
                                                    void print_mechanism_global_var_structure(bool print_initializers) override
                                                    Print the structure that wraps all global variables used in the NMODL.
                                                    +
                                                    void print_global_macros()
                                                    Print NEURON global variable macros.
                                                    std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
                                                    A vector of parameters represented by a 4-tuple of strings:
                                                    diff --git a/html/doxygen/src_2main_8cpp_source.html b/html/doxygen/src_2main_8cpp_source.html index f68b046ee0..bde18bd1ba 100644 --- a/html/doxygen/src_2main_8cpp_source.html +++ b/html/doxygen/src_2main_8cpp_source.html @@ -724,7 +724,7 @@
                                                    Visitor to inline local procedure and function calls
                                                    Version information and units file path.
                                                    -
                                                    void visit_program(const ast::Program &program) override
                                                    Main and only member function to call after creating an instance of this class.
                                                    +
                                                    void visit_program(const ast::Program &program) override
                                                    Main and only member function to call after creating an instance of this class.
                                                    Represents top level AST node for whole NMODL input.
                                                    Definition: program.hpp:39
                                                    bool sparse_solver_exists(const ast::Ast &node)
                                                    THIS FILE IS GENERATED AT BUILD TIME AND SHALL NOT BE EDITED.
                                                    diff --git a/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info-members.html b/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info-members.html index fda78258b3..0c60604900 100644 --- a/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info-members.html +++ b/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info-members.html @@ -163,30 +163,31 @@ range_parameter_varsnmodl::codegen::CodegenInfo range_state_varsnmodl::codegen::CodegenInfo require_wrote_concnmodl::codegen::CodegenInfo - semanticsnmodl::codegen::CodegenInfo - state_varsnmodl::codegen::CodegenInfo - SymbolType typedefnmodl::codegen::CodegenInfo - table_assigned_variablesnmodl::codegen::CodegenInfo - table_countnmodl::codegen::CodegenInfo - table_statement_variablesnmodl::codegen::CodegenInfo - thread_callback_registernmodl::codegen::CodegenInfo - thread_data_indexnmodl::codegen::CodegenInfo - thread_safenmodl::codegen::CodegenInfo - thread_var_data_sizenmodl::codegen::CodegenInfo - thread_var_thread_idnmodl::codegen::CodegenInfo - thread_variablesnmodl::codegen::CodegenInfo - top_blocksnmodl::codegen::CodegenInfo - top_local_thread_idnmodl::codegen::CodegenInfo - top_local_thread_sizenmodl::codegen::CodegenInfo - top_local_variablesnmodl::codegen::CodegenInfo - top_verbatim_blocksnmodl::codegen::CodegenInfo - tqitem_indexnmodl::codegen::CodegenInfo - use_ion_variablesnmodl::codegen::CodegenInfo - variables_in_verbatimnmodl::codegen::CodegenInfo - vectorizenmodl::codegen::CodegenInfo - watch_countnmodl::codegen::CodegenInfo - watch_statementsnmodl::codegen::CodegenInfo - write_concentrationnmodl::codegen::CodegenInfo + semantic_variable_countnmodl::codegen::CodegenInfo + semanticsnmodl::codegen::CodegenInfo + state_varsnmodl::codegen::CodegenInfo + SymbolType typedefnmodl::codegen::CodegenInfo + table_assigned_variablesnmodl::codegen::CodegenInfo + table_countnmodl::codegen::CodegenInfo + table_statement_variablesnmodl::codegen::CodegenInfo + thread_callback_registernmodl::codegen::CodegenInfo + thread_data_indexnmodl::codegen::CodegenInfo + thread_safenmodl::codegen::CodegenInfo + thread_var_data_sizenmodl::codegen::CodegenInfo + thread_var_thread_idnmodl::codegen::CodegenInfo + thread_variablesnmodl::codegen::CodegenInfo + top_blocksnmodl::codegen::CodegenInfo + top_local_thread_idnmodl::codegen::CodegenInfo + top_local_thread_sizenmodl::codegen::CodegenInfo + top_local_variablesnmodl::codegen::CodegenInfo + top_verbatim_blocksnmodl::codegen::CodegenInfo + tqitem_indexnmodl::codegen::CodegenInfo + use_ion_variablesnmodl::codegen::CodegenInfo + variables_in_verbatimnmodl::codegen::CodegenInfo + vectorizenmodl::codegen::CodegenInfo + watch_countnmodl::codegen::CodegenInfo + watch_statementsnmodl::codegen::CodegenInfo + write_concentrationnmodl::codegen::CodegenInfo diff --git a/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info.html b/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info.html index c261ba6ebf..45bca72133 100644 --- a/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info.html +++ b/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info.html @@ -242,6 +242,9 @@ int num_equations = 0  number of equations (i.e. More...
                                                      +int semantic_variable_count + number of semantic variables More...
                                                    +  bool emit_cvode = false  True if we have to emit CVODE code TODO: Figure out when this needs to be true. More...
                                                      @@ -399,7 +402,7 @@

                                                    -

                                                    Definition at line 347 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 350 of file codegen_info.hpp.

                                                    @@ -429,7 +432,7 @@

                                                    Definition at line 479 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 482 of file codegen_info.hpp.

                                                    @@ -456,7 +459,7 @@

                                                    -

                                                    Definition at line 474 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 477 of file codegen_info.hpp.

                                                    @@ -750,7 +753,7 @@

                                                    Definition at line 470 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 473 of file codegen_info.hpp.

                                                    @@ -828,7 +831,7 @@

                                                    Definition at line 356 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 359 of file codegen_info.hpp.

                                                    @@ -864,7 +867,7 @@

                                                    Definition at line 434 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 437 of file codegen_info.hpp.

                                                    @@ -882,7 +885,7 @@

                                                    Definition at line 306 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 309 of file codegen_info.hpp.

                                                    @@ -900,7 +903,7 @@

                                                    Definition at line 387 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 390 of file codegen_info.hpp.

                                                    @@ -918,7 +921,7 @@

                                                    Definition at line 416 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 419 of file codegen_info.hpp.

                                                    @@ -936,7 +939,7 @@

                                                    Definition at line 393 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 396 of file codegen_info.hpp.

                                                    @@ -954,7 +957,7 @@

                                                    Definition at line 324 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 327 of file codegen_info.hpp.

                                                    @@ -972,7 +975,7 @@

                                                    Definition at line 422 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 425 of file codegen_info.hpp.

                                                    @@ -990,7 +993,7 @@

                                                    Definition at line 333 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 336 of file codegen_info.hpp.

                                                    @@ -1044,7 +1047,7 @@

                                                    Definition at line 327 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 330 of file codegen_info.hpp.

                                                    @@ -1080,7 +1083,7 @@

                                                    Definition at line 446 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 449 of file codegen_info.hpp.

                                                    @@ -1098,7 +1101,7 @@

                                                    Definition at line 443 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 446 of file codegen_info.hpp.

                                                    @@ -1134,7 +1137,7 @@

                                                    Definition at line 303 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 306 of file codegen_info.hpp.

                                                    @@ -1152,7 +1155,7 @@

                                                    Definition at line 342 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 345 of file codegen_info.hpp.

                                                    @@ -1170,7 +1173,7 @@

                                                    Definition at line 376 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 379 of file codegen_info.hpp.

                                                    @@ -1188,7 +1191,7 @@

                                                    Definition at line 379 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 382 of file codegen_info.hpp.

                                                    @@ -1224,7 +1227,7 @@

                                                    Definition at line 339 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 342 of file codegen_info.hpp.

                                                    @@ -1242,7 +1245,7 @@

                                                    Definition at line 336 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 339 of file codegen_info.hpp.

                                                    @@ -1260,7 +1263,7 @@

                                                    Definition at line 413 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 416 of file codegen_info.hpp.

                                                    @@ -1278,7 +1281,7 @@

                                                    Definition at line 440 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 443 of file codegen_info.hpp.

                                                    @@ -1296,7 +1299,7 @@

                                                    Definition at line 390 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 393 of file codegen_info.hpp.

                                                    @@ -1314,7 +1317,7 @@

                                                    Definition at line 321 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 324 of file codegen_info.hpp.

                                                    @@ -1332,7 +1335,7 @@

                                                    Definition at line 345 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 348 of file codegen_info.hpp.

                                                    @@ -1404,7 +1407,7 @@

                                                    Definition at line 318 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 321 of file codegen_info.hpp.

                                                    @@ -1422,7 +1425,7 @@

                                                    Definition at line 312 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 315 of file codegen_info.hpp.

                                                    @@ -1458,7 +1461,7 @@

                                                    Definition at line 410 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 413 of file codegen_info.hpp.

                                                    @@ -1476,7 +1479,7 @@

                                                    Definition at line 309 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 312 of file codegen_info.hpp.

                                                    @@ -1513,7 +1516,7 @@

                                                    Definition at line 315 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 318 of file codegen_info.hpp.

                                                    @@ -1585,7 +1588,7 @@

                                                    Definition at line 370 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 373 of file codegen_info.hpp.

                                                    @@ -1603,7 +1606,7 @@

                                                    Definition at line 403 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 406 of file codegen_info.hpp.

                                                    @@ -1639,7 +1642,7 @@

                                                    Definition at line 330 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 333 of file codegen_info.hpp.

                                                    @@ -1657,7 +1660,7 @@

                                                    Definition at line 373 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 376 of file codegen_info.hpp.

                                                    @@ -1675,7 +1678,7 @@

                                                    Definition at line 353 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 356 of file codegen_info.hpp.

                                                    @@ -1693,7 +1696,7 @@

                                                    Definition at line 350 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 353 of file codegen_info.hpp.

                                                    @@ -1712,7 +1715,7 @@

                                                    -

                                                    Definition at line 364 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 367 of file codegen_info.hpp.

                                                    @@ -1730,7 +1733,25 @@

                                                    Definition at line 492 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 495 of file codegen_info.hpp.

                                                    + + + + +

                                                    ◆ semantic_variable_count

                                                    + +
                                                    +
                                                    + + + + +
                                                    int nmodl::codegen::CodegenInfo::semantic_variable_count
                                                    +
                                                    + +

                                                    number of semantic variables

                                                    + +

                                                    Definition at line 302 of file codegen_info.hpp.

                                                    @@ -1748,7 +1769,7 @@

                                                    Definition at line 419 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 422 of file codegen_info.hpp.

                                                    @@ -1766,7 +1787,7 @@

                                                    Definition at line 359 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 362 of file codegen_info.hpp.

                                                    @@ -1782,7 +1803,7 @@

                                                    -

                                                    Definition at line 407 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 410 of file codegen_info.hpp.

                                                    @@ -1818,7 +1839,7 @@

                                                    Definition at line 406 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 409 of file codegen_info.hpp.

                                                    @@ -1927,7 +1948,7 @@

                                                    Definition at line 396 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 399 of file codegen_info.hpp.

                                                    @@ -1945,7 +1966,7 @@

                                                    Definition at line 425 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 428 of file codegen_info.hpp.

                                                    @@ -2000,7 +2021,7 @@

                                                    Definition at line 367 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 370 of file codegen_info.hpp.

                                                    @@ -2018,7 +2039,7 @@

                                                    Definition at line 428 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 431 of file codegen_info.hpp.

                                                    @@ -2036,7 +2057,7 @@

                                                    Definition at line 383 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 386 of file codegen_info.hpp.

                                                    @@ -2054,7 +2075,7 @@

                                                    Definition at line 399 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 402 of file codegen_info.hpp.

                                                    @@ -2072,7 +2093,7 @@

                                                    Definition at line 437 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 440 of file codegen_info.hpp.

                                                    @@ -2127,7 +2148,7 @@

                                                    Definition at line 431 of file codegen_info.hpp.

                                                    +

                                                    Definition at line 434 of file codegen_info.hpp.

                                                    diff --git a/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info.js b/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info.js index fd92a8171f..517c8d0579 100644 --- a/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info.js +++ b/html/doxygen/structnmodl_1_1codegen_1_1_codegen_info.js @@ -67,6 +67,7 @@ var structnmodl_1_1codegen_1_1_codegen_info = [ "range_parameter_vars", "structnmodl_1_1codegen_1_1_codegen_info.html#a9fc99f3e7bce31fd0529633d31ba1547", null ], [ "range_state_vars", "structnmodl_1_1codegen_1_1_codegen_info.html#a1b0772831b48698d9c2236eb6fe8fd01", null ], [ "require_wrote_conc", "structnmodl_1_1codegen_1_1_codegen_info.html#a4bcbe36d2867e8a47f8c9770b1542b42", null ], + [ "semantic_variable_count", "structnmodl_1_1codegen_1_1_codegen_info.html#a0300c6f861c67b9585bdcb3d118d49cb", null ], [ "semantics", "structnmodl_1_1codegen_1_1_codegen_info.html#a3df07d9392bed844484c8e86232395aa", null ], [ "state_vars", "structnmodl_1_1codegen_1_1_codegen_info.html#af49fe1ab8d7c35c937585ce7ac7992df", null ], [ "table_assigned_variables", "structnmodl_1_1codegen_1_1_codegen_info.html#afbc429aec58b9dbf16f0db7fc2d1869a", null ], diff --git a/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.html b/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.html index a32d5696d7..8b63b86dbd 100644 --- a/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.html +++ b/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.html @@ -118,6 +118,8 @@ std::string get_neuron_cpp_code (const std::string &nmodl_text)  print entire code More...
                                                      +std::string reindent_and_trim_text (const std::string &text) +   SCENARIO ("Check NEURON codegen for simple MOD file", "[codegen][neuron_boilerplate]")    SCENARIO ("Check whether PROCEDURE and FUNCTION need setdata call", "[codegen][needsetdata]") @@ -185,6 +187,26 @@

                                                    Definition at line 53 of file codegen_neuron_cpp_visitor.cpp.

                                                    + + + +

                                                    ◆ reindent_and_trim_text()

                                                    + +
                                                    +
                                                    + + + + + + + + +
                                                    std::string reindent_and_trim_text (const std::string & text)
                                                    +
                                                    + +

                                                    Definition at line 61 of file codegen_neuron_cpp_visitor.cpp.

                                                    +
                                                    @@ -213,7 +235,7 @@

                                                    -

                                                    Definition at line 62 of file codegen_neuron_cpp_visitor.cpp.

                                                    +

                                                    Definition at line 65 of file codegen_neuron_cpp_visitor.cpp.

                                                    @@ -243,7 +265,7 @@

                                                    -

                                                    Definition at line 258 of file codegen_neuron_cpp_visitor.cpp.

                                                    +

                                                    Definition at line 280 of file codegen_neuron_cpp_visitor.cpp.

                                                    diff --git a/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.js b/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.js index 7064c9181b..c2a6681f63 100644 --- a/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.js +++ b/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.js @@ -2,6 +2,7 @@ var test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp = [ [ "create_neuron_cpp_visitor", "test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.html#a47ab3ea80a6131688c22d1dc6b8f1cc4", null ], [ "get_neuron_cpp_code", "test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.html#a33db5c2eff91499afc3aad328f0806b2", null ], + [ "reindent_and_trim_text", "test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.html#a1ff8c3b1258b14ff5fc934680fc8d849", null ], [ "SCENARIO", "test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.html#a5c385aee2be7ca89645c0bfb2f5871a0", null ], [ "SCENARIO", "test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp.html#a6a1c9926e35547d2044418cee996a451", null ] ]; \ No newline at end of file diff --git a/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp_source.html b/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp_source.html index 63a0ae4f28..1f3169e193 100644 --- a/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp_source.html +++ b/html/doxygen/test_2unit_2codegen_2codegen__neuron__cpp__visitor_8cpp_source.html @@ -154,61 +154,61 @@
                                                    58  return ss.str();
                                                    59 }
                                                    60 
                                                    -
                                                    61 
                                                    -
                                                    62 SCENARIO("Check NEURON codegen for simple MOD file", "[codegen][neuron_boilerplate]") {
                                                    -
                                                    63  GIVEN("A simple mod file with RANGE, ARRAY and ION variables") {
                                                    -
                                                    64  std::string const nmodl_text = R"(
                                                    -
                                                    65  TITLE unit test based on passive membrane channel
                                                    -
                                                    66 
                                                    -
                                                    67  UNITS {
                                                    -
                                                    68  (mV) = (millivolt)
                                                    -
                                                    69  (mA) = (milliamp)
                                                    -
                                                    70  (S) = (siemens)
                                                    -
                                                    71  }
                                                    -
                                                    72 
                                                    -
                                                    73  NEURON {
                                                    -
                                                    74  SUFFIX pas_test
                                                    -
                                                    75  USEION na READ ena WRITE ina
                                                    -
                                                    76  NONSPECIFIC_CURRENT i
                                                    -
                                                    77  RANGE g, e
                                                    -
                                                    78  RANGE ar
                                                    -
                                                    79  }
                                                    -
                                                    80 
                                                    -
                                                    81  PARAMETER {
                                                    -
                                                    82  g = .001 (S/cm2) <0,1e9>
                                                    -
                                                    83  e = -70 (mV)
                                                    -
                                                    84  }
                                                    -
                                                    85 
                                                    -
                                                    86  ASSIGNED {
                                                    -
                                                    87  v (mV)
                                                    -
                                                    88  i (mA/cm2)
                                                    -
                                                    89  ena (mV)
                                                    -
                                                    90  ina (mA/cm2)
                                                    -
                                                    91  ar[2]
                                                    -
                                                    92  }
                                                    -
                                                    93 
                                                    -
                                                    94  INITIAL {
                                                    -
                                                    95  ar[0] = 1
                                                    -
                                                    96  }
                                                    -
                                                    97 
                                                    -
                                                    98  BREAKPOINT {
                                                    -
                                                    99  SOLVE states METHOD cnexp
                                                    -
                                                    100  i = g*(v - e)
                                                    -
                                                    101  ina = g*(v - ena)
                                                    -
                                                    102  }
                                                    -
                                                    103 
                                                    -
                                                    104  STATE {
                                                    -
                                                    105  s
                                                    -
                                                    106  }
                                                    -
                                                    107 
                                                    -
                                                    108  DERIVATIVE states {
                                                    -
                                                    109  s' = ar[0]
                                                    -
                                                    110  }
                                                    -
                                                    111  )";
                                                    -
                                                    112  auto const reindent_and_trim_text = [](const auto& text) {
                                                    -
                                                    113  return reindent_text(stringutils::trim(text));
                                                    -
                                                    114  };
                                                    -
                                                    115  auto const generated = reindent_and_trim_text(get_neuron_cpp_code(nmodl_text));
                                                    +
                                                    61 std::string reindent_and_trim_text(const std::string& text) {
                                                    +
                                                    62  return reindent_text(stringutils::trim(text));
                                                    +
                                                    63 };
                                                    +
                                                    64 
                                                    +
                                                    65 SCENARIO("Check NEURON codegen for simple MOD file", "[codegen][neuron_boilerplate]") {
                                                    +
                                                    66  GIVEN("A simple mod file with RANGE, ARRAY and ION variables") {
                                                    +
                                                    67  std::string const nmodl_text = R"(
                                                    +
                                                    68  TITLE unit test based on passive membrane channel
                                                    +
                                                    69 
                                                    +
                                                    70  UNITS {
                                                    +
                                                    71  (mV) = (millivolt)
                                                    +
                                                    72  (mA) = (milliamp)
                                                    +
                                                    73  (S) = (siemens)
                                                    +
                                                    74  }
                                                    +
                                                    75 
                                                    +
                                                    76  NEURON {
                                                    +
                                                    77  SUFFIX pas_test
                                                    +
                                                    78  USEION na READ ena WRITE ina
                                                    +
                                                    79  NONSPECIFIC_CURRENT i
                                                    +
                                                    80  RANGE g, e
                                                    +
                                                    81  RANGE ar
                                                    +
                                                    82  }
                                                    +
                                                    83 
                                                    +
                                                    84  PARAMETER {
                                                    +
                                                    85  g = .001 (S/cm2) <0,1e9>
                                                    +
                                                    86  e = -70 (mV)
                                                    +
                                                    87  }
                                                    +
                                                    88 
                                                    +
                                                    89  ASSIGNED {
                                                    +
                                                    90  v (mV)
                                                    +
                                                    91  i (mA/cm2)
                                                    +
                                                    92  ena (mV)
                                                    +
                                                    93  ina (mA/cm2)
                                                    +
                                                    94  ar[2]
                                                    +
                                                    95  }
                                                    +
                                                    96 
                                                    +
                                                    97  INITIAL {
                                                    +
                                                    98  ar[0] = 1
                                                    +
                                                    99  }
                                                    +
                                                    100 
                                                    +
                                                    101  BREAKPOINT {
                                                    +
                                                    102  SOLVE states METHOD cnexp
                                                    +
                                                    103  i = g*(v - e)
                                                    +
                                                    104  ina = g*(v - ena)
                                                    +
                                                    105  }
                                                    +
                                                    106 
                                                    +
                                                    107  STATE {
                                                    +
                                                    108  s
                                                    +
                                                    109  }
                                                    +
                                                    110 
                                                    +
                                                    111  DERIVATIVE states {
                                                    +
                                                    112  s' = ar[0]
                                                    +
                                                    113  }
                                                    +
                                                    114  )";
                                                    +
                                                    115  auto const generated = reindent_and_trim_text(get_neuron_cpp_code(nmodl_text));
                                                    116  THEN("Correct includes are printed") {
                                                    117  std::string expected_includes = R"(#include <math.h>
                                                    118 #include <stdio.h>
                                                    @@ -219,7 +219,7 @@
                                                    123 #include "nrniv_mf.h"
                                                    124 #include "section_fwd.hpp")";
                                                    125 
                                                    -
                                                    126  REQUIRE_THAT(generated, ContainsSubstring(reindent_and_trim_text(expected_includes)));
                                                    +
                                                    126  REQUIRE_THAT(generated, ContainsSubstring(reindent_and_trim_text(expected_includes)));
                                                    127  }
                                                    128  THEN("Correct number of variables are printed") {
                                                    129  std::string expected_num_variables =
                                                    @@ -227,7 +227,7 @@
                                                    131 static constexpr auto number_of_floating_point_variables = 10;)";
                                                    132 
                                                    133  REQUIRE_THAT(generated,
                                                    -
                                                    134  ContainsSubstring(reindent_and_trim_text(expected_num_variables)));
                                                    +
                                                    134  ContainsSubstring(reindent_and_trim_text(expected_num_variables)));
                                                    135  }
                                                    136  THEN("Correct using-directives are printed ") {
                                                    137  std::string expected_using_directives = R"(namespace {
                                                    @@ -246,12 +246,12 @@
                                                    150 } // namespace)";
                                                    151 
                                                    152  REQUIRE_THAT(generated,
                                                    -
                                                    153  ContainsSubstring(reindent_and_trim_text(expected_using_directives)));
                                                    +
                                                    153  ContainsSubstring(reindent_and_trim_text(expected_using_directives)));
                                                    154  }
                                                    155  THEN("Correct namespace is printed") {
                                                    156  std::string expected_namespace = R"(namespace neuron {)";
                                                    157 
                                                    -
                                                    158  REQUIRE_THAT(generated, ContainsSubstring(reindent_and_trim_text(expected_namespace)));
                                                    +
                                                    158  REQUIRE_THAT(generated, ContainsSubstring(reindent_and_trim_text(expected_namespace)));
                                                    159  }
                                                    160  THEN("Correct channel information are printed") {
                                                    161  std::string expected_channel_info = R"(/** channel information */
                                                    @@ -270,14 +270,14 @@
                                                    174  };)";
                                                    175 
                                                    176  REQUIRE_THAT(generated,
                                                    -
                                                    177  ContainsSubstring(reindent_and_trim_text(expected_channel_info)));
                                                    +
                                                    177  ContainsSubstring(reindent_and_trim_text(expected_channel_info)));
                                                    178  }
                                                    179  THEN("Correct global variables are printed") {
                                                    180  std::string expected_global_variables =
                                                    181  R"(static neuron::container::field_index _slist1[1], _dlist1[1];)";
                                                    182 
                                                    183  REQUIRE_THAT(generated,
                                                    -
                                                    184  ContainsSubstring(reindent_and_trim_text(expected_global_variables)));
                                                    +
                                                    184  ContainsSubstring(reindent_and_trim_text(expected_global_variables)));
                                                    185  }
                                                    186  THEN("Correct pas_test_Instance") {
                                                    187  std::string expected =
                                                    @@ -298,7 +298,7 @@
                                                    202  pas_test_Store* global{&pas_test_global};
                                                    203  };)";
                                                    204 
                                                    -
                                                    205  REQUIRE_THAT(generated, ContainsSubstring(reindent_and_trim_text(expected)));
                                                    +
                                                    205  REQUIRE_THAT(generated, ContainsSubstring(reindent_and_trim_text(expected)));
                                                    206  }
                                                    207  THEN("Correct HOC global variables are printed") {
                                                    208  std::string expected_hoc_global_variables =
                                                    @@ -314,110 +314,132 @@
                                                    218  };)";
                                                    219 
                                                    220  REQUIRE_THAT(generated,
                                                    -
                                                    221  ContainsSubstring(reindent_and_trim_text(expected_hoc_global_variables)));
                                                    +
                                                    221  ContainsSubstring(reindent_and_trim_text(expected_hoc_global_variables)));
                                                    222  }
                                                    223  THEN("Placeholder nrn_cur function is printed") {
                                                    224  std::string expected_placeholder_nrn_cur =
                                                    225  R"(void nrn_cur_pas_test(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {})";
                                                    226 
                                                    227  REQUIRE_THAT(generated,
                                                    -
                                                    228  ContainsSubstring(reindent_and_trim_text(expected_placeholder_nrn_cur)));
                                                    +
                                                    228  ContainsSubstring(reindent_and_trim_text(expected_placeholder_nrn_cur)));
                                                    229  }
                                                    230  THEN("Placeholder nrn_state function is printed") {
                                                    231  std::string expected_placeholder_nrn_state =
                                                    232  R"(void nrn_state_pas_test(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {)";
                                                    233 
                                                    234  REQUIRE_THAT(generated,
                                                    -
                                                    235  ContainsSubstring(reindent_and_trim_text(expected_placeholder_nrn_state)));
                                                    +
                                                    235  ContainsSubstring(reindent_and_trim_text(expected_placeholder_nrn_state)));
                                                    236  }
                                                    237  THEN("Initialization function for slist/dlist is printed correctly") {
                                                    238  std::string expected_initlists_s_var = "_slist1[0] = {4, 0};";
                                                    239  std::string expected_initlists_Ds_var = "_dlist1[0] = {7, 0};";
                                                    240 
                                                    241  REQUIRE_THAT(generated,
                                                    -
                                                    242  ContainsSubstring(reindent_and_trim_text(expected_initlists_s_var)));
                                                    +
                                                    242  ContainsSubstring(reindent_and_trim_text(expected_initlists_s_var)));
                                                    243  REQUIRE_THAT(generated,
                                                    -
                                                    244  ContainsSubstring(reindent_and_trim_text(expected_initlists_Ds_var)));
                                                    +
                                                    244  ContainsSubstring(reindent_and_trim_text(expected_initlists_Ds_var)));
                                                    245  }
                                                    246  THEN("Placeholder registration function is printed") {
                                                    247  std::string expected_placeholder_reg = R"CODE(/** register channel with the simulator */
                                                    248  extern "C" void __test_reg() {
                                                    249  _initlists();
                                                    250 
                                                    -
                                                    251  register_mech(mechanism_info, nrn_alloc_pas_test, nrn_cur_pas_test, nrn_jacob_pas_test, nrn_state_pas_test, nrn_init_pas_test, hoc_nrnpointerindex, 1);
                                                    +
                                                    251  ion_reg("na", -10000.);
                                                    252 
                                                    -
                                                    253  mech_type = nrn_get_mechtype(mechanism_info[1]);
                                                    -
                                                    254  _nrn_mechanism_register_data_fields(mech_type,
                                                    -
                                                    255  _nrn_mechanism_field<double>{"g"} /* 0 */,
                                                    -
                                                    256  _nrn_mechanism_field<double>{"e"} /* 1 */,
                                                    -
                                                    257  _nrn_mechanism_field<double>{"i"} /* 2 */,
                                                    -
                                                    258  _nrn_mechanism_field<double>{"ar", 2} /* 3 */,
                                                    -
                                                    259  _nrn_mechanism_field<double>{"s"} /* 4 */,
                                                    -
                                                    260  _nrn_mechanism_field<double>{"ena"} /* 5 */,
                                                    -
                                                    261  _nrn_mechanism_field<double>{"ina"} /* 6 */,
                                                    -
                                                    262  _nrn_mechanism_field<double>{"Ds"} /* 7 */,
                                                    -
                                                    263  _nrn_mechanism_field<double>{"v_unused"} /* 8 */,
                                                    -
                                                    264  _nrn_mechanism_field<double>{"g_unused"} /* 9 */,
                                                    -
                                                    265  _nrn_mechanism_field<double*>{"ion_ena", "na_ion"} /* 0 */,
                                                    -
                                                    266  _nrn_mechanism_field<double*>{"ion_ina", "na_ion"} /* 1 */,
                                                    -
                                                    267  _nrn_mechanism_field<double*>{"ion_dinadv", "na_ion"} /* 2 */
                                                    -
                                                    268  );
                                                    -
                                                    269 
                                                    -
                                                    270  hoc_register_prop_size(mech_type, 10, 3);
                                                    -
                                                    271  hoc_register_dparam_semantics(mech_type, 0, "na_ion");
                                                    -
                                                    272  hoc_register_dparam_semantics(mech_type, 1, "na_ion");
                                                    -
                                                    273  hoc_register_dparam_semantics(mech_type, 2, "na_ion");
                                                    -
                                                    274  })CODE";
                                                    -
                                                    275 
                                                    -
                                                    276  REQUIRE_THAT(generated,
                                                    -
                                                    277  ContainsSubstring(reindent_and_trim_text(expected_placeholder_reg)));
                                                    -
                                                    278  }
                                                    -
                                                    279  }
                                                    -
                                                    280 }
                                                    -
                                                    281 
                                                    -
                                                    282 
                                                    -
                                                    283 SCENARIO("Check whether PROCEDURE and FUNCTION need setdata call", "[codegen][needsetdata]") {
                                                    -
                                                    284  GIVEN("mod file with GLOBAL and RANGE variables used in FUNC and PROC") {
                                                    -
                                                    285  std::string input_nmodl = R"(
                                                    +
                                                    253  _na_sym = hoc_lookup("na_ion");
                                                    +
                                                    254 
                                                    +
                                                    255  register_mech(mechanism_info, nrn_alloc_pas_test, nrn_cur_pas_test, nrn_jacob_pas_test, nrn_state_pas_test, nrn_init_pas_test, hoc_nrnpointerindex, 1);
                                                    +
                                                    256 
                                                    +
                                                    257  mech_type = nrn_get_mechtype(mechanism_info[1]);
                                                    +
                                                    258  _nrn_mechanism_register_data_fields(mech_type,
                                                    +
                                                    259  _nrn_mechanism_field<double>{"g"} /* 0 */,
                                                    +
                                                    260  _nrn_mechanism_field<double>{"e"} /* 1 */,
                                                    +
                                                    261  _nrn_mechanism_field<double>{"i"} /* 2 */,
                                                    +
                                                    262  _nrn_mechanism_field<double>{"ar", 2} /* 3 */,
                                                    +
                                                    263  _nrn_mechanism_field<double>{"s"} /* 4 */,
                                                    +
                                                    264  _nrn_mechanism_field<double>{"ena"} /* 5 */,
                                                    +
                                                    265  _nrn_mechanism_field<double>{"ina"} /* 6 */,
                                                    +
                                                    266  _nrn_mechanism_field<double>{"Ds"} /* 7 */,
                                                    +
                                                    267  _nrn_mechanism_field<double>{"v_unused"} /* 8 */,
                                                    +
                                                    268  _nrn_mechanism_field<double>{"g_unused"} /* 9 */,
                                                    +
                                                    269  _nrn_mechanism_field<double*>{"ion_ena", "na_ion"} /* 0 */,
                                                    +
                                                    270  _nrn_mechanism_field<double*>{"ion_ina", "na_ion"} /* 1 */,
                                                    +
                                                    271  _nrn_mechanism_field<double*>{"ion_dinadv", "na_ion"} /* 2 */
                                                    +
                                                    272  );
                                                    +
                                                    273 
                                                    +
                                                    274  hoc_register_prop_size(mech_type, 10, 3);
                                                    +
                                                    275  hoc_register_dparam_semantics(mech_type, 0, "na_ion");
                                                    +
                                                    276  hoc_register_dparam_semantics(mech_type, 1, "na_ion");
                                                    +
                                                    277  hoc_register_dparam_semantics(mech_type, 2, "na_ion");
                                                    +
                                                    278  })CODE";
                                                    +
                                                    279 
                                                    +
                                                    280  REQUIRE_THAT(generated,
                                                    +
                                                    281  ContainsSubstring(reindent_and_trim_text(expected_placeholder_reg)));
                                                    +
                                                    282  }
                                                    +
                                                    283  }
                                                    +
                                                    284  GIVEN("A simple point process mod file") {
                                                    +
                                                    285  std::string const nmodl_text = R"(
                                                    286  NEURON {
                                                    -
                                                    287  SUFFIX test
                                                    -
                                                    288  RANGE x
                                                    -
                                                    289  GLOBAL s
                                                    -
                                                    290  }
                                                    -
                                                    291  PARAMETER {
                                                    -
                                                    292  s = 2
                                                    -
                                                    293  }
                                                    -
                                                    294  ASSIGNED {
                                                    -
                                                    295  x
                                                    -
                                                    296  }
                                                    -
                                                    297  PROCEDURE a() {
                                                    -
                                                    298  x = get_42()
                                                    -
                                                    299  }
                                                    -
                                                    300  FUNCTION b() {
                                                    -
                                                    301  a()
                                                    -
                                                    302  }
                                                    -
                                                    303  FUNCTION get_42() {
                                                    -
                                                    304  get_42 = 42
                                                    -
                                                    305  }
                                                    -
                                                    306  )";
                                                    -
                                                    307  const auto& ast = NmodlDriver().parse_string(input_nmodl);
                                                    -
                                                    308  std::stringstream ss;
                                                    -
                                                    309  auto cvisitor = create_neuron_cpp_visitor(ast, input_nmodl, ss);
                                                    -
                                                    310  cvisitor->visit_program(*ast);
                                                    -
                                                    311  const auto symtab = ast->get_symbol_table();
                                                    -
                                                    312  THEN("use_range_ptr_var property is added to needed FUNC and PROC") {
                                                    -
                                                    313  auto use_range_ptr_var_funcs = symtab->get_variables_with_properties(
                                                    -
                                                    314  NmodlType::use_range_ptr_var);
                                                    -
                                                    315  REQUIRE(use_range_ptr_var_funcs.size() == 2);
                                                    -
                                                    316  const auto a = symtab->lookup("a");
                                                    -
                                                    317  REQUIRE(a->has_any_property(NmodlType::use_range_ptr_var));
                                                    -
                                                    318  const auto b = symtab->lookup("b");
                                                    -
                                                    319  REQUIRE(b->has_any_property(NmodlType::use_range_ptr_var));
                                                    -
                                                    320  const auto get_42 = symtab->lookup("get_42");
                                                    -
                                                    321  REQUIRE(!get_42->has_any_property(NmodlType::use_range_ptr_var));
                                                    -
                                                    322  }
                                                    -
                                                    323  }
                                                    -
                                                    324 }
                                                    +
                                                    287  POINT_PROCESS test_pp
                                                    +
                                                    288  }
                                                    +
                                                    289  )";
                                                    +
                                                    290  THEN("Correct mechanism registration function is called") {
                                                    +
                                                    291  std::string expected_placeholder_point_reg =
                                                    +
                                                    292  "_pointtype = point_register_mech(mechanism_info, nrn_alloc_test_pp, nullptr, "
                                                    +
                                                    293  "nullptr, nullptr, nrn_init_test_pp, hoc_nrnpointerindex, 1, _hoc_create_pnt, "
                                                    +
                                                    294  "_hoc_destroy_pnt, _member_func);";
                                                    +
                                                    295 
                                                    +
                                                    296  auto const generated = reindent_and_trim_text(get_neuron_cpp_code(nmodl_text));
                                                    +
                                                    297 
                                                    +
                                                    298  REQUIRE_THAT(generated,
                                                    +
                                                    299  ContainsSubstring(reindent_and_trim_text(expected_placeholder_point_reg)));
                                                    +
                                                    300  }
                                                    +
                                                    301  }
                                                    +
                                                    302 }
                                                    +
                                                    303 
                                                    +
                                                    304 
                                                    +
                                                    305 SCENARIO("Check whether PROCEDURE and FUNCTION need setdata call", "[codegen][needsetdata]") {
                                                    +
                                                    306  GIVEN("mod file with GLOBAL and RANGE variables used in FUNC and PROC") {
                                                    +
                                                    307  std::string input_nmodl = R"(
                                                    +
                                                    308  NEURON {
                                                    +
                                                    309  SUFFIX test
                                                    +
                                                    310  RANGE x
                                                    +
                                                    311  GLOBAL s
                                                    +
                                                    312  }
                                                    +
                                                    313  PARAMETER {
                                                    +
                                                    314  s = 2
                                                    +
                                                    315  }
                                                    +
                                                    316  ASSIGNED {
                                                    +
                                                    317  x
                                                    +
                                                    318  }
                                                    +
                                                    319  PROCEDURE a() {
                                                    +
                                                    320  x = get_42()
                                                    +
                                                    321  }
                                                    +
                                                    322  FUNCTION b() {
                                                    +
                                                    323  a()
                                                    +
                                                    324  }
                                                    +
                                                    325  FUNCTION get_42() {
                                                    +
                                                    326  get_42 = 42
                                                    +
                                                    327  }
                                                    +
                                                    328  )";
                                                    +
                                                    329  const auto& ast = NmodlDriver().parse_string(input_nmodl);
                                                    +
                                                    330  std::stringstream ss;
                                                    +
                                                    331  auto cvisitor = create_neuron_cpp_visitor(ast, input_nmodl, ss);
                                                    +
                                                    332  cvisitor->visit_program(*ast);
                                                    +
                                                    333  const auto symtab = ast->get_symbol_table();
                                                    +
                                                    334  THEN("use_range_ptr_var property is added to needed FUNC and PROC") {
                                                    +
                                                    335  auto use_range_ptr_var_funcs = symtab->get_variables_with_properties(
                                                    +
                                                    336  NmodlType::use_range_ptr_var);
                                                    +
                                                    337  REQUIRE(use_range_ptr_var_funcs.size() == 2);
                                                    +
                                                    338  const auto a = symtab->lookup("a");
                                                    +
                                                    339  REQUIRE(a->has_any_property(NmodlType::use_range_ptr_var));
                                                    +
                                                    340  const auto b = symtab->lookup("b");
                                                    +
                                                    341  REQUIRE(b->has_any_property(NmodlType::use_range_ptr_var));
                                                    +
                                                    342  const auto get_42 = symtab->lookup("get_42");
                                                    +
                                                    343  REQUIRE(!get_42->has_any_property(NmodlType::use_range_ptr_var));
                                                    +
                                                    344  }
                                                    +
                                                    345  }
                                                    +
                                                    346 }
                                                    @@ -436,8 +458,9 @@
                                                    Visitor that solves ODEs using old solvers of NEURON
                                                    Visitor to inline local procedure and function calls
                                                    -
                                                    SCENARIO("Check NEURON codegen for simple MOD file", "[codegen][neuron_boilerplate]")
                                                    +
                                                    SCENARIO("Check NEURON codegen for simple MOD file", "[codegen][neuron_boilerplate]")
                                                    THIS FILE IS GENERATED AT BUILD TIME AND SHALL NOT BE EDITED.
                                                    +
                                                    std::string reindent_and_trim_text(const std::string &text)