From 0d53223c8ddc5316ea0c708faaad6611ae3cd047 Mon Sep 17 00:00:00 2001 From: ilkilic Date: Mon, 22 Jul 2024 13:44:37 +0200 Subject: [PATCH 1/4] add CITATION.cff --- CITATION.cff | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 CITATION.cff diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 00000000..f2a56c0f --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,29 @@ +cff-version: 1.2.0 +message: "If you use this software, please cite it as below." +title: "eFEL" +doi: 10.5281/zenodo.593869 +url: https://doi.org/10.5281/zenodo.593869 +abstract: "The Electrophys Feature Extraction Library (eFEL) allows neuroscientists to automatically extract features from time series data recorded from neurons (both in vitro and in silico). Examples are the action potential width and amplitude in voltage traces recorded during whole-cell patch clamp experiments. The user of the library provides a set of traces and selects the features to be calculated. The library will then extract the requested features and return the values to the user." +authors: + - family-names: "Ranjan" + given-names: "Rajnish" + - family-names: "Van Geit" + given-names: "Werner" + - family-names: "Moor" + given-names: "Ruben" + - family-names: "Roessert" + given-names: "Christian" + - family-names: "Riquelme" + given-names: "Luis" + - family-names: "Damart" + given-names: "Tanguy" + - family-names: "Jaquier" + given-names: "Aurélien" + - family-names: "Tuncel" + given-names: "Anil" + - family-names: "Mandge" + given-names: "Darshan" + - family-names: "Kilic" + given-names: "Ilkan" +date-released: 2020-03-01 +publisher: "Zenodo" From e7334cddb02d034e96f171cd75213b4d75034775 Mon Sep 17 00:00:00 2001 From: ilkilic Date: Mon, 22 Jul 2024 13:44:54 +0200 Subject: [PATCH 2/4] update authors list --- AUTHORS.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/AUTHORS.txt b/AUTHORS.txt index 9680b0d5..90e8b111 100644 --- a/AUTHORS.txt +++ b/AUTHORS.txt @@ -7,3 +7,4 @@ Tanguy Damart @ BBP Aurélien Jaquier @ BBP Anil Tuncel @ BBP Darshan Mandge @ BBP +Ilkan Kilic @ BBP \ No newline at end of file From cdfc7b61111835f80b36671a89b04bc47388f47e Mon Sep 17 00:00:00 2001 From: ilkilic Date: Mon, 22 Jul 2024 13:45:29 +0200 Subject: [PATCH 3/4] update readme --- README.md | 30 +++++------------------------- 1 file changed, 5 insertions(+), 25 deletions(-) diff --git a/README.md b/README.md index eb76dfcb..f30bbba6 100644 --- a/README.md +++ b/README.md @@ -53,7 +53,7 @@ Citation - DOI + DOI @@ -76,31 +76,11 @@ At the moment we provide a way to automatically compile and install the library as a Python module. Instructions on how to compile the eFEL as a standalone C++ library can be found [here](http://efel.readthedocs.io/en/latest/installation.html#installing-the-c-standalone-library). +How to cite +=========== +If you use this repository in your work, please refer to the "Cite this repository" button at the top of the repository page to get various citation formats, including APA and BibTeX. -Citation -======== - -When you use this eFEL software for your research, we ask you to cite the following publications (this includes poster presentations): - -``` - @article{efel, - title={eFEL}, - DOI={10.5281/zenodo.593869}, - url={https://doi.org/10.5281/zenodo.593869} - abstractNote={The Electrophys Feature Extraction Library (eFEL) allows neuroscientists to automatically extract features from time series data recorded from neurons (both in vitro and in silico). Examples are the action potential width and amplitude in voltage traces recorded during whole-cell patch clamp experiments. The user of the library provides a set of traces and selects the features to be calculated. The library will then extract the requested features and return the values to the user.}, - publisher={Zenodo}, - author={Ranjan, Rajnish and - Van Geit, Werner and - Moor, Ruben and - Rössert, Christian and - Riquelme, Juan Luis and - Damart, Tanguy and - Jaquier, Aurélien and - Tuncel, Anil}, - year={2023}, - month={Jul} - } -``` +For detailed citation information, please refer to the `CITATION.cff <./CITATION.cff>`_ file. Requirements ============ From 185aeffff20f4940c009999086644004f22d6897 Mon Sep 17 00:00:00 2001 From: ilkilic Date: Tue, 23 Jul 2024 14:07:26 +0200 Subject: [PATCH 4/4] update readme --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index f30bbba6..bb99851a 100644 --- a/README.md +++ b/README.md @@ -78,9 +78,9 @@ library can be found [here](http://efel.readthedocs.io/en/latest/installation.ht How to cite =========== -If you use this repository in your work, please refer to the "Cite this repository" button at the top of the repository page to get various citation formats, including APA and BibTeX. +When you use this eFEL software for your research, we ask you to cite it (this includes poster presentations) by referring to the "Cite this repository" button at the top of the repository page to get various citation formats, including APA and BibTeX. -For detailed citation information, please refer to the `CITATION.cff <./CITATION.cff>`_ file. +For detailed citation information, please refer to the [CITATION.cff](./CITATION.cff) file. Requirements ============