tests for expanded dsDNA repr to Dseq obj #894
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| name: Tests & Coverage | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| - "!master" # excludes master branch | |
| - "!testpypi" # excludes testpypi branch | |
| tags-ignore: | |
| - "*.*" | |
| pull_request: {} | |
| jobs: | |
| build: | |
| name: Test (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["macos-latest", "windows-latest"] | |
| python-version: ["3.12", "3.11", "3.10", "3.9", "3.8"] | |
| include: | |
| - os: ubuntu-latest | |
| python-version: "3.8" | |
| codecov: true | |
| - os: ubuntu-latest | |
| python-version: "3.9" | |
| - os: ubuntu-latest | |
| python-version: "3.10" | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| - os: ubuntu-latest | |
| python-version: "3.12" | |
| defaults: | |
| run: | |
| shell: bash | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: 🛑 Cancel Previous Runs | |
| uses: styfle/[email protected] | |
| - name: ⬇️ Checkout | |
| uses: actions/checkout@v3 | |
| - name: 🔩 Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: 🐍 Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs.prefer-active-python: true | |
| - name: 🔩 list Poetry settings | |
| run: poetry config --list | |
| - name: 🔩 Install with Poetry | |
| run: poetry install --all-extras --with test | |
| - name: 🔎 poetry run python run_test.py | |
| run: poetry run python run_test.py | |
| # Enforce pre-commit hooks =========================== | |
| - name: Get changed files | |
| if: (matrix.codecov) | |
| id: changed-files | |
| uses: tj-actions/changed-files@v45 | |
| with: | |
| since_last_remote_commit: true | |
| - uses: actions/cache@v4 | |
| if: (matrix.codecov) | |
| id: cache-precommit | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: ${{ runner.os }}-precommit-hooks-v2-${{ hashFiles('**/.pre-commit-config.yaml') }} | |
| - name: Installing pre-commit hooks (cached) | |
| if: (matrix.codecov) && (steps.cache-precommit.outputs.cache-hit != 'true') | |
| run: poetry run pre-commit install --install-hooks | |
| - name: Run style checking via pre-commit | |
| if: (matrix.codecov && steps.changed-files.outputs.all_changed_files) | |
| run: | | |
| echo "Changed files:" | |
| echo "${{ steps.changed-files.outputs.all_changed_files }}" | tr ' ' '\n' | |
| poetry run pre-commit run --files ${{ steps.changed-files.outputs.all_changed_files }} | |
| # ====================================================== | |
| - name: 🔼 Upload coverage to Codecov | |
| if: (matrix.codecov) | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: true |