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RLSeq 1.3.0

Bioc 3.16 release with the addition of a noise analysis function.

RLSeq 1.2.0

Same as 1.1.0 but released on Bioc 3.15

RLSeq 1.1.0

Bioc 3.14 release

RLSeq 1.0.1

Updated with RLHub update. Added 118 new samples to the database.

RLSeq 1.0.0

First official release on bioconductor -- link.

RLSeq 0.99.11

Pre-release. This version is prior to the first official release (v1.0.0), anticipated in Oct. 2021.

Package

  • Base class
    • RLRanges stores R-loop data and RLSeq results.
  • Workflow -The wrapper function RLSeq() performs all analysis steps. However, individual functions are also accessible.
  • Model
    • The model for predicting sample quality label is updated to the latest version, incorporating 231 samples in training. This model showed high accuracy (.9304) on a test set of 115 samples.