.gitignore

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.gitignore.swp
Main_figure_6_CCI_with_Sup/scripts/X1_method_comp/.ipynb_checkpoints/
Main_figure_6_CCI_with_Sup/scripts/__pycache__/
Main_figure_6_CCI_with_Sup/scripts/utils/__pycache__/
Main_figure_6_CCI_with_Sup/scripts/utils/load_data/__pycache__/
Main_figure_6_CCI_with_Sup/scripts/utils/visualisation/__pycache__/
Main_figure_6_CCI_with_Sup/plots/*
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!Main_figure_6_CCI_with_Sup/plots/X5_slideSeq/.gitkeep
!Main_figure_6_CCI_with_Sup/plots/X4_seqFISH/.gitkeep
!Main_figure_6_CCI_with_Sup/plots/X3_skin_analysis/.gitkeep
!Main_figure_6_CCI_with_Sup/plots/X1_X3_diagnostics/.gitkeep
!Main_figure_6_CCI_with_Sup/plots/X2_method_comp_clusters/.gitkeep
!Main_figure_6_CCI_with_Sup/plots/X1_method_comp/.gitkeep
Main_figure_6_CCI_with_Sup/data/breast/singlecellsignalr/singlecellsignalr.rds
Main_figure_6_CCI_with_Sup/data/breast/cellchat_breast.rds
Main_figure_6_CCI_with_Sup/data/breast/cluster/cellchat.rds
Main_figure_6_CCI_with_Sup/data/breast/natmi/breast_expr.csv
Main_figure_6_CCI_with_Sup/data/breast/cluster/natmi/LR-pairs_connectomeDB2020_lit/*
Main_figure_6_CCI_with_Sup/data/breast/cluster/natmi/breast_expr.csv
Main_figure_6_CCI_with_Sup/data/breast/cluster/singlecellsignalr.rds
Main_figure_6_CCI_with_Sup/scripts/X2_method_comp_clusters/.ipynb_checkpoints/X7_method_cci_vis-checkpoint.ipynb
Main_figure_6_CCI_with_Sup/scripts/X2_method_comp_clusters/__pycache__/helpers.cpython-38.pyc
Main_figure_6_CCI_with_Sup/scripts/X3_skin_analysis/.ipynb_checkpoints/ X7_method_cci_vis-checkpoint.ipynb
Main_figure_6_CCI_with_Sup/scripts/X3_skin_analysis/.ipynb_checkpoints/X4_vis_IL34-CSF1R_results-checkpoint.ipynb
Main_figure_6_CCI_with_Sup/scripts/X3_skin_analysis/.ipynb_checkpoints/X5_vis_high-pair_results-checkpoint.ipynb
Main_figure_6_CCI_with_Sup/scripts/X3_skin_analysis/__pycache__/helpers.cpython-38.pyc
Main_figure_6_CCI_with_Sup/scripts/X4_seqFish/.ipynb_checkpoints/X3_vis_st-lr-cci-checkpoint.ipynb