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Site2Target #3666

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peymanzarrineh opened this issue Nov 28, 2024 · 1 comment
Open
9 of 10 tasks

Site2Target #3666

peymanzarrineh opened this issue Nov 28, 2024 · 1 comment
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1. awaiting moderation submitted and waiting clearance to access resources

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@peymanzarrineh
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Update the following URL to point to the GitHub repository of
the package you wish to submit to Bioconductor

Confirm the following by editing each check box to '[x]'

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@bioc-issue-bot
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Hi @peymanzarrineh

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: Site2Target
Type: Package
Title: An R package to associate peaks and target genes
Version: 0.99.0
Authors@R: person("Peyman Zarrineh", email="[email protected]", role=c("cre", "aut"), comment = c(ORCID = "0000-0003-4820-4101"))
Description: Statistics implemented for both peak-wise and gene-wise associations. In peak-wise associations, the p-value of the target genes of a given set of peaks are calculated. Negative binomial or Poisson distributions can be used for modeling the unweighted peaks targets and log-nromal can be used to model the weighted peaks. In gene-wise associations a table consisting of a set of genes, mapped to specific peaks, is generated using the given rules.
BugReports: https://github.com/fls-bioinformatics-core/Site2Target/issues
License: GPL-2
Encoding: UTF-8
LazyData: false
Imports: S4Vectors, stats, utils, BiocGenerics, GenomeInfoDb, MASS, IRanges, GenomicRanges
biocViews: Annotation, ChIPSeq, Software, Epigenetics, GeneExpression, GeneTarget
RoxygenNote: 7.3.2
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr

@bioc-issue-bot bioc-issue-bot added the 1. awaiting moderation submitted and waiting clearance to access resources label Nov 28, 2024
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