REQUIRED_PACKAGES

## Vincent J. Carey (VJC)

hca
celldex
MASS
SummarizedExperiment
TENxPBMCData
SingleCellExperiment
scater
SingleR
devtools
hca
DT
LoomExperiment
scater
scuttle
rols
ontoProc
shiny
vjcitn/csamaDist


## Laurent Gatto (LG)
Spectra
mzR
QFeatures
MsCoreUtils
scp
scpdata
SingleCellExperiment
MsDataHub
rpx
tidyverse
factoextra
msdata
rhdf5
impute
ProtGenerics
PSMatch
pheatmap
limma
ProtGenerics
RforMassSpectrometry/SpectraVis

## Robert Gentleman (RG)
OSCA.intro
OSCA.basic
OSCA.advanced
OSCA.multisample
OSCA.workflows
ade4
airway
Biobase
dplyr
factoextra
GGally
ggplot2
Hiiragi2013
MASS
pheatmap
phyloseq
SummarizedExperiment
ccb-hms/scDiagnostics
SingleCellExperiment
methods
isotree
RColorBrewer
ranger
Hotelling
rlang
AUCell
BiocStyle
knitr
Matrix
rmarkdown
scran
scRNAseq
SingleR
celldex
scuttle
scater
testthat

## Wolfgang Huber (WH)
knitr
dplyr
ggplot2
tidyr
purrr
devtools
reshape2
stringr
terrainr
imagefx
dill/beyonce
EBImage
IHW

## Julia Philipp (JP)

## Johannes Rainer (JR)
Spectra
MsCoreUtils
MsExperiment
MetaboCoreUtils
MetaboAnnotation
msdata
png
xcms
jorainer/SpectraTutorials
pheatmap
SummarizedExperiment

## Davide Risso (DR)
DropletTestFiles
DropletUtils
scuttle
EnsDb.Hsapiens.v86
scater
scran
scDblFinder
scry
NewWave
GGally
igraph
SingleR
celldex
pheatmap
network
sna
intergraph
SpatialExperiment
STexampleData
ggspavis
nnSVG
BayesSpace
SPOTlight
scRNAseq
ggcorrplot
scatterpie
arrow
SpatialFeatureExperiment
Voyager
SFEData

## Charlotte Soneson (CS)
mikelove/airway2
tximeta
DESeq2
org.Hs.eg.db
SummarizedExperiment
vsn
ExploreModelMatrix
apeglm
iSEE
pheatmap
iSEEu
edgeR
BiocStyle
knitr
rjson
AnnotationDbi
shiny
muscat
scran
scuttle
scater
igraph
csoneson/ConfoundingExplorer
TENxPBMCData
SingleCellExperiment
htmltools
rmarkdown
dplyr
ggplot2
tximport
iSEEde
quarto
patchwork
cowplot

## Katharina Imkeller (KI)

## Maria Doyle (MD)
airway
AnnotationDbi
AnnotationHub
BiocCheck
BiocFileCache
BiocManager
BiocParallel
biocthis
biomaRt
Biostrings
BSgenome
BSgenome.Hsapiens.UCSC.hg19
BSgenome.Hsapiens.UCSC.hg38
devtools
dplyr
ensembldb
EnsDb.Hsapiens.v86
ExperimentHub
GenomicAlignments
GenomicRanges
GenomicFeatures
ggplot2
Gviz
Homo.sapiens
HubPub
hugene20sttranscriptcluster.db
IRanges
KEGGREST
org.Hs.eg.db
Organism.dplyr
pwalign
readr
rtracklayer
Rsamtools
RNAseqData.HNRNPC.bam.chr14
SummarizedExperiment
tibble
tidyr
tidyverse
TxDb.Hsapiens.UCSC.hg19.knownGene
TxDb.Hsapiens.UCSC.hg38.knownGene
VariantAnnotation


## Mike Love (ML)
dplyr
tibble
tidyr
plyranges
tidybulk
tidySummarizedExperiment
nullranges
fluentGenomics
randomNames
TxDb.Hsapiens.UCSC.hg19.knownGene
org.Hs.eg.db
AnnotationHub
GenomeInfoDb
ggplot2
ggridges
plotgardener
oct4
tximeta
org.Mm.eg.db
SummarizedExperiment
AnnotationDbi
stringr
DESeq2
ggrepel
fission
purrr
glmnet


## Constantin Ahlmann-Eltze (for Wolfgang)
lemur
tidyverse
muscData
scater
SingleCellExperiment
MatrixGenerics
transformGamPoi
glmGamPoi
ggrepel
Seurat
irlba
uwot
harmony
scales
tibble