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[SUGGESTION] https://doi.org/10.1038/s41467-022-29104-y (Gandhi et al.) Number of case series': {1 case, 27 sequences} #16

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Markman42 opened this issue Dec 25, 2022 · 0 comments
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@Markman42
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A case series will only be included if it fits the inclusion criteria specified in the original paper. As well as the inclusion criteria specified within the paper only public sequences with available accessions will be included in this repository via this route.

Please confirm that each of the below criteria is met by the case series('s) suggested for inclusion:

  • Are at least two SARS-CoV-2 genomes from this case series publicly available?
  • Is there a time period of at least 28 days between the first genome in the series and the last?
  • Is there sufficient public clinical evidence that the patient possessed a suppressed immune system during the time period covered by these genomes?
  • Is there sufficient evidence that these genomes are obtained by sampling the same patient?
  • Is the first genome within the case series sufficiently high (>= 95% coverage overall, 100% in spike gene) quality? Later genomes can be of lower quality but the "day 0" genome is treated as a baseline.

Information on case series

| Accession | Day / Date | Coverage % | DOI |
GanBank Accession Numbers| patient followed for 292 days, whole genome sequencing, DOI: https://doi.org/10.1038/s41467-022-29104-y
OL307721
OL307722
OL307723
OL307724
OL307725
OL307726
OL307727
OL307728
OL307729
OL307720
OL307730
OL307731
OL307732
OL307733
OL307734
OL307735
OL307736
OL307737
OL307738
OL307739
OL307740
OL307741
OL307742
OL307743
OL307744
OL307745
OL307746

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