Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Matrix View Incorrectly Calculating with Zero Reads #33

Open
starkfree opened this issue Feb 5, 2017 · 2 comments
Open

Matrix View Incorrectly Calculating with Zero Reads #33

starkfree opened this issue Feb 5, 2017 · 2 comments
Assignees
Labels
Milestone

Comments

@starkfree
Copy link
Contributor

Fix a problem with the matrix view where entries with no reads are still getting score values when they should not be. Need an alternative for when a group doesn't even exist within a file included in the view.

@starkfree starkfree added the bug label Feb 5, 2017
@starkfree starkfree added this to the Alpha 1 Build milestone Feb 5, 2017
@starkfree starkfree self-assigned this Feb 5, 2017
@starkfree starkfree modified the milestones: Alpha 2 Build, Alpha 1 Build Feb 7, 2017
@starkfree
Copy link
Contributor Author

I think this issue likely stems from not setting a low-end threshold with regards to which reads are valid reads. If a threshold is set for log2 fold change, this might not be an issue. Changing the label to reflect the status change and moving this to Alpha 2 Build

@starkfree
Copy link
Contributor Author

Plan is to set a threshold of 20 initially, but later to make this a configurable option which can be tweaked on a view by view basis.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant