Analysis of Gene Interaction Graphs as Prior Knowledge for Machine Learning Models

Repository for the paper "Analysis of Gene Interaction Graphs as PriorKnowledge for Machine Learning Models"

Environment setup

You can create the appropriate conda environment by running

conda create --name genegraph --file spec-file.txt

The main file for the single gene inference pipeline is single_gene_inference.py

The main file for the validation on clinical tasks is clinical_pipeline/adjacency_regularized_classification.py