From 60104e43aa22ee80914b7b1cd2d54dda446a9e26 Mon Sep 17 00:00:00 2001 From: Lawson Woods Date: Thu, 26 Sep 2024 12:16:22 -0700 Subject: [PATCH] minor tweaks --- joss_paper/paper.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/joss_paper/paper.md b/joss_paper/paper.md index ecc248a..0223c6e 100644 --- a/joss_paper/paper.md +++ b/joss_paper/paper.md @@ -13,9 +13,6 @@ authors: - name: Hugo Macdermott-Opeskin orcid: 0000-0002-7393-7457 affiliation: 1 - - name: Oliver Beckstein - orcid: 000-0003-1340-0831 - affiliation: 1 - name: Edis Jakupovic affiliation: 1 - name: Yuxuan Zhuang @@ -24,6 +21,9 @@ authors: - name: Richard J Gowers orcid: 0000-0002-3241-1846 affiliations: 1 + - name: Oliver Beckstein + orcid: 000-0003-1340-0831 + affiliation: 1 affiliations: - name: Placeholder index: 1 @@ -91,7 +91,7 @@ u = mda.Universe("sample_topology.top", "s3://sample-bucket-name/trajectory.h5md Initial benchmarks show that `Zarrtraj` can iterate through an AWS S3 cloud trajectory (load into memory one frame at a time) at roughly 1/2 or 1/3 the speed it can iterate through the same trajectory from disk and roughly -1/5 to 1/10 the speed it can iterate through the same trajectory in XTC format \autoref{fig:benchmark}. +1/5 to 1/10 the speed it can iterate through the same trajectory on disk in XTC format \autoref{fig:benchmark}. However, it should be noted that this speed is influenced by network latency and that writing parallelized algorithms can offset this loss of speed.