Skip to content

Latest commit

 

History

History
592 lines (444 loc) · 24.8 KB

onnx.rst

File metadata and controls

592 lines (444 loc) · 24.8 KB

torch.onnx

.. automodule:: torch.onnx

Open Neural Network eXchange (ONNX) is an open standard format for representing machine learning models. The torch.onnx module can export PyTorch models to ONNX. The model can then be consumed by any of the many runtimes that support ONNX.

Here is a simple script which exports a pretrained AlexNet to an ONNX file named alexnet.onnx. The call to torch.onnx.export runs the model once to trace its execution and then exports the traced model to the specified file:

import torch
import torchvision

dummy_input = torch.randn(10, 3, 224, 224, device="cuda")
model = torchvision.models.alexnet(pretrained=True).cuda()

# Providing input and output names sets the display names for values
# within the model's graph. Setting these does not change the semantics
# of the graph; it is only for readability.
#
# The inputs to the network consist of the flat list of inputs (i.e.
# the values you would pass to the forward() method) followed by the
# flat list of parameters. You can partially specify names, i.e. provide
# a list here shorter than the number of inputs to the model, and we will
# only set that subset of names, starting from the beginning.
input_names = [ "actual_input_1" ] + [ "learned_%d" % i for i in range(16) ]
output_names = [ "output1" ]

torch.onnx.export(model, dummy_input, "alexnet.onnx", verbose=True, input_names=input_names, output_names=output_names)

The resulting alexnet.onnx file contains a binary protocol buffer which contains both the network structure and parameters of the model you exported (in this case, AlexNet). The argument verbose=True causes the exporter to print out a human-readable representation of the model:

# These are the inputs and parameters to the network, which have taken on
# the names we specified earlier.
graph(%actual_input_1 : Float(10, 3, 224, 224)
      %learned_0 : Float(64, 3, 11, 11)
      %learned_1 : Float(64)
      %learned_2 : Float(192, 64, 5, 5)
      %learned_3 : Float(192)
      # ---- omitted for brevity ----
      %learned_14 : Float(1000, 4096)
      %learned_15 : Float(1000)) {
  # Every statement consists of some output tensors (and their types),
  # the operator to be run (with its attributes, e.g., kernels, strides,
  # etc.), its input tensors (%actual_input_1, %learned_0, %learned_1)
  %17 : Float(10, 64, 55, 55) = onnx::Conv[dilations=[1, 1], group=1, kernel_shape=[11, 11], pads=[2, 2, 2, 2], strides=[4, 4]](%actual_input_1, %learned_0, %learned_1), scope: AlexNet/Sequential[features]/Conv2d[0]
  %18 : Float(10, 64, 55, 55) = onnx::Relu(%17), scope: AlexNet/Sequential[features]/ReLU[1]
  %19 : Float(10, 64, 27, 27) = onnx::MaxPool[kernel_shape=[3, 3], pads=[0, 0, 0, 0], strides=[2, 2]](%18), scope: AlexNet/Sequential[features]/MaxPool2d[2]
  # ---- omitted for brevity ----
  %29 : Float(10, 256, 6, 6) = onnx::MaxPool[kernel_shape=[3, 3], pads=[0, 0, 0, 0], strides=[2, 2]](%28), scope: AlexNet/Sequential[features]/MaxPool2d[12]
  # Dynamic means that the shape is not known. This may be because of a
  # limitation of our implementation (which we would like to fix in a
  # future release) or shapes which are truly dynamic.
  %30 : Dynamic = onnx::Shape(%29), scope: AlexNet
  %31 : Dynamic = onnx::Slice[axes=[0], ends=[1], starts=[0]](%30), scope: AlexNet
  %32 : Long() = onnx::Squeeze[axes=[0]](%31), scope: AlexNet
  %33 : Long() = onnx::Constant[value={9216}](), scope: AlexNet
  # ---- omitted for brevity ----
  %output1 : Float(10, 1000) = onnx::Gemm[alpha=1, beta=1, broadcast=1, transB=1](%45, %learned_14, %learned_15), scope: AlexNet/Sequential[classifier]/Linear[6]
  return (%output1);
}

You can also verify the output using the ONNX library, which you can install using conda:

conda install -c conda-forge onnx

Then, you can run:

import onnx

# Load the ONNX model
model = onnx.load("alexnet.onnx")

# Check that the model is well formed
onnx.checker.check_model(model)

# Print a human readable representation of the graph
print(onnx.helper.printable_graph(model.graph))

You can also run the exported model with one of the many runtimes that support ONNX. For example after installing ONNX Runtime, you can load and run the model:

import onnxruntime as ort

ort_session = ort.InferenceSession("alexnet.onnx")

outputs = ort_session.run(
    None,
    {"actual_input_1": np.random.randn(10, 3, 224, 224).astype(np.float32)},
)
print(outputs[0])

Here is a more involved tutorial on exporting a model and running it with ONNX Runtime.

Internally, torch.onnx.export() requires a :class:`torch.jit.ScriptModule` rather than a :class:`torch.nn.Module`. If the passed-in model is not already a ScriptModule, export() will use tracing to convert it to one:

  • Tracing: If torch.onnx.export() is called with a Module that is not already a ScriptModule, it first does the equivalent of :func:`torch.jit.trace`, which executes the model once with the given args and records all operations that happen during that execution. This means that if your model is dynamic, e.g., changes behavior depending on input data, the exported model will not capture this dynamic behavior. Similarly, a trace is likely to be valid only for a specific input size. We recommend examining the exported model and making sure the operators look reasonable. Tracing will unroll loops and if statements, exporting a static graph that is exactly the same as the traced run. If you want to export your model with dynamic control flow, you will need to use scripting.
  • Scripting: Compiling a model via scripting preserves dynamic control flow and is valid for inputs of different sizes. To use scripting:
    • Use :func:`torch.jit.script` to produce a ScriptModule.
    • Call torch.onnx.export() with the ScriptModule as the model, and set the example_outputs arg. This is required so that the types and shapes of the outputs can be captured without executing the model.

See Introduction to TorchScript and TorchScript for more details, including how to compose tracing and scripting to suit the particular requirements of different models.

PyTorch models can be written using NumPy or Python types and functions, but during :ref:`tracing<tracing-vs-scripting>`, any variables of NumPy or Python types (rather than torch.Tensor) are converted to constants, which will produce the wrong result if those values should change depending on the inputs.

For example, rather than using numpy functions on numpy.ndarrays:

# Bad! Will be replaced with constants during tracing.
x, y = np.random.rand(1, 2), np.random.rand(1, 2)
np.concatenate((x, y), axis=1)

Use torch operators on torch.Tensors:

# Good! Tensor operations will be captured during tracing.
x, y = torch.randn(1, 2), torch.randn(1, 2)
torch.cat((x, y), dim=1)

And rather than using :func:`torch.Tensor.item` (which converts a Tensor to a Python built-in number):

# Bad! y.item() will be replaced with a constant during tracing.
def forward(self, x, y):
    return x.reshape(y.item(), -1)

Use torch's support for implicit casting of single-element tensors:

# Good! y will be preserved as a variable during tracing.
def forward(self, x, y):
    return x.reshape(y, -1)

Using the Tensor.data field can produce an incorrect trace and therefore an incorrect ONNX graph. Use :func:`torch.Tensor.detach` instead. (Work is ongoing to remove Tensor.data entirely).

In tracing mode, shape values obtained from tensor.shape are traced as tensors, and share the same memory. This might cause a mismatch in values of the final outputs. As a workaround, avoid use of inplace operations in these scenarios. For example, in the model:

class Model(torch.nn.Module):
  def forward(self, states):
      batch_size, seq_length = states.shape[:2]
      real_seq_length = seq_length
      real_seq_length += 2
      return real_seq_length + seq_length

real_seq_length and seq_length share the same memory in tracing mode. This could be avoided by rewriting the inplace operation:

real_seq_length = real_seq_length + 2
  • Only torch.Tensors, numeric types that can be trivially converted to torch.Tensors (e.g. float, int), and tuples and lists of those types are supported as model inputs or outputs. Dict and str inputs and outputs are accepted in :ref:`tracing<tracing-vs-scripting>` mode, but:
    • Any computation that depends on the value of a dict or a str input will be replaced with the constant value seen during the one traced execution.
    • Any output that is a dict will be silently replaced with a flattened sequence of its values (keys will be removed). E.g. {"foo": 1, "bar": 2} becomes (1, 2).
    • Any output that is a str will be silently removed.
  • Certain operations involving tuples and lists are not supported in :ref:`scripting<tracing-vs-scripting>` mode due to limited support in ONNX for nested sequences. In particular appending a tuple to a list is not supported. In tracing mode, the nested sequences will be flattened automatically during the tracing.

Due to differences in implementations of operators, running the exported model on different runtimes may produce different results from each other or from PyTorch. Normally these differences are numerically small, so this should only be a concern if your application is sensitive to these small differences.

Tensor indexing patterns that cannot be exported are listed below. If you are experiencing issues exporting a model that does not include any of the unsupported patterns below, please double check that you are exporting with the latest opset_version.

When indexing into a tensor for reading, the following patterns are not supported:

# Tensor indices that includes negative values.
data[torch.tensor([[1, 2], [2, -3]]), torch.tensor([-2, 3])]
# Workarounds: use positive index values.

When indexing into a Tensor for writing, the following patterns are not supported:

# Multiple tensor indices if any has rank >= 2
data[torch.tensor([[1, 2], [2, 3]]), torch.tensor([2, 3])] = new_data
# Workarounds: use single tensor index with rank >= 2,
#              or multiple consecutive tensor indices with rank == 1.

# Multiple tensor indices that are not consecutive
data[torch.tensor([2, 3]), :, torch.tensor([1, 2])] = new_data
# Workarounds: transpose `data` such that tensor indices are consecutive.

# Tensor indices that includes negative values.
data[torch.tensor([1, -2]), torch.tensor([-2, 3])] = new_data
# Workarounds: use positive index values.

# Implicit broadcasting required for new_data.
data[torch.tensor([[0, 2], [1, 1]]), 1:3] = new_data
# Workarounds: expand new_data explicitly.
# Example:
#   data shape: [3, 4, 5]
#   new_data shape: [5]
#   expected new_data shape after broadcasting: [2, 2, 2, 5]

When exporting a model that includes unsupported operators, you'll see an error message like:

RuntimeError: ONNX export failed: Couldn't export operator foo

When that happens, you'll need to either change the model to not use that operator, or add support for the operator.

Adding support for operators requires contributing a change to PyTorch's source code. See CONTRIBUTING for general instructions on that, and below for specific instructions on the code changes required for supporting an operator.

During export, each node in the TorchScript graph is visited in topological order. Upon visiting a node, the exporter tries to find a registered symbolic functions for that node. Symbolic functions are implemented in Python. A symbolic function for an op named foo would look something like:

def foo(
  g: torch._C.Graph,
  input_0: torch._C.Value,
  input_1: torch._C.Value) -> Union[None, torch._C.Value, List[torch._C.Value]]:
  """
  Modifies g (e.g., using "g.op()"), adding the ONNX operations representing
  this PyTorch function.

  Args:
    g (Graph): graph to write the ONNX representation into.
    input_0 (Value): value representing the variables which contain
        the first input for this operator.
    input_1 (Value): value representing the variables which contain
        the second input for this operator.

  Returns:
    A Value or List of Values specifying the ONNX nodes that compute something
    equivalent to the original PyTorch operator with the given inputs.
    Returns None if it cannot be converted to ONNX.
  """
  ...

The torch._C types are Python wrappers around the types defined in C++ in ir.h.

The process for adding a symbolic function depends on the type of operator.

ATen is PyTorch’s built-in tensor library. If the operator is an ATen operator (shows up in the TorchScript graph with the prefix aten::):

  • Define the symbolic function in torch/onnx/symbolic_opset<version>.py, for example torch/onnx/symbolic_opset9.py. Make sure the function has the same name as the ATen function, which may be declared in torch/_C/_VariableFunctions.pyi or torch/nn/functional.pyi (these files are generated at build time, so will not appear in your checkout until you build PyTorch).
  • The first arg is always the ONNX graph that is being built for export. Other arg names must EXACTLY match the names in the .pyi file, because dispatch is done with keyword arguments.
  • In the symbolic function, if the operator is in the ONNX standard operator set, we only need to create a node to represent the ONNX operator in the graph. If not, we can create a graph of several standard operators that have equivalent semantics to the ATen operator.
  • If an input argument is a Tensor, but ONNX asks for a scalar, we have to explicitly do the conversion. :func:`symbolic_helper._scalar` can convert a scalar tensor into a python scalar, and :func:`symbolic_helper._if_scalar_type_as` can turn a Python scalar into a PyTorch tensor.

Here is an example of handling missing symbolic function for the ELU operator.

If we run the following code:

print(
  torch.jit.trace(torch.nn.ELU(), # module
                  torch.ones(1)   # example input
                  ).graph)

We see something like:

graph(%self : __torch__.torch.nn.modules.activation.___torch_mangle_0.ELU,
      %input : Float(1, strides=[1], requires_grad=0, device=cpu)):
  %4 : float = prim::Constant[value=1.]()
  %5 : int = prim::Constant[value=1]()
  %6 : int = prim::Constant[value=1]()
  %7 : Float(1, strides=[1], requires_grad=0, device=cpu) = aten::elu(%input, %4, %5, %6)
  return (%7)

Since we see aten::elu in the graph, we know this is an ATen operator.

We check the ONNX operator list, and confirm that Elu is standardized in ONNX.

We find a signature for elu in torch/nn/functional.pyi:

def elu(input: Tensor, alpha: float = ..., inplace: bool = ...) -> Tensor: ...

We add the following lines to symbolic_opset9.py:

def elu(g, input, alpha, inplace=False):
    return g.op("Elu", input, alpha_f=_scalar(alpha))

Now PyTorch is able to export models containing the aten::elu operator!

See the symbolic_opset*.py files for more examples.

If the operator is a sub-class of :class:`torch.autograd.Function`, there are two ways to export it.

You can add a static method named symbolic to your function class. It should return ONNX operators that represent the function's behavior in ONNX. For example:

class MyRelu(torch.autograd.Function):
    @staticmethod
    def forward(ctx, input: torch.Tensor) -> torch.Tensor:
        ctx.save_for_backward(input)
        return input.clamp(min=0)

    @staticmethod
    def symbolic(g: torch._C.graph, input: torch._C.Value) -> torch._C.Value:
        return g.op("Clip", input, g.op("Constant", value_t=torch.tensor(0, dtype=torch.float)))

Alternatively, you can register a custom symbolic function. This gives the symbolic function access to more info through the TorchScript Node object for the original operation, which gets passed in as the second argument (after the Graph object).

All autograd Functions appear in the TorchScript graph as prim::PythonOp nodes. In order to differentiate between different Function subclasses, the symbolic function should use the name kwarg which gets set to the name of the class.

Custom symbolic functions should add type and shape information by calling setType(...) on Value objects before returning them (implemented in C++ by torch::jit::Value::setType). This is not required, but it can help the exporter's shape and type inference for down-stream nodes. For a non-trivial example of setType, see test_aten_embedding_2 in test_operators.py.

The example below shows how you can access requires_grad via the Node object:

class MyClip(torch.autograd.Function):
    @staticmethod
    def forward(ctx, input, min):
        ctx.save_for_backward(input)
        return input.clamp(min=min)

class MyRelu(torch.autograd.Function):
    @staticmethod
    def forward(ctx, input):
        ctx.save_for_backward(input)
        return input.clamp(min=0)

def symbolic_python_op(g: torch._C.Graph, n: torch._C.Node, *args, **kwargs):
    print("original node: ", n)
    for i, out in enumerate(n.outputs()):
        print("original output {}: {}, requires grad: {}".format(i, out, out.requiresGrad()))
    import torch.onnx.symbolic_helper as sym_helper
    for i, arg in enumerate(args):
        requires_grad = arg.requiresGrad() if sym_helper._is_value(arg) else False
        print("arg {}: {}, requires grad: {}".format(i, arg, requires_grad))

    name = kwargs["name"]
    ret = None
    if name == "MyClip":
        ret = g.op("Clip", args[0], args[1])
    elif name == "MyRelu":
        ret = g.op("Relu", args[0])
    else:
        # Logs a warning and returns None
        return _unimplemented("prim::PythonOp", "unknown node kind: " + name)
    # Copy type and shape from original node.
    ret.setType(n.type())
    return ret

from torch.onnx import register_custom_op_symbolic
register_custom_op_symbolic("prim::PythonOp", symbolic_python_op, 1)

If a model uses a custom operator implemented in C++ as described in Extending TorchScript with Custom C++ Operators, you can export it by following this example:

from torch.onnx import register_custom_op_symbolic
from torch.onnx.symbolic_helper import parse_args

# Define custom symbolic function
@parse_args("v", "v", "f", "i")
def symbolic_foo_forward(g, input1, input2, attr1, attr2):
    return g.op("custom_domain::Foo", input1, input2, attr1_f=attr1, attr2_i=attr2)

# Register custom symbolic function
register_custom_op_symbolic("custom_ops::foo_forward", symbolic_foo_forward, 9)

class FooModel(torch.nn.Module):
    def __init__(self, attr1, attr2):
        super(FooModule, self).__init__()
        self.attr1 = attr1
        self.attr2 = attr2

    def forward(self, input1, input2):
        # Calling custom op
        return torch.ops.custom_ops.foo_forward(input1, input2, self.attr1, self.attr2)

model = FooModel(attr1, attr2)
torch.onnx.export(
  model,
  (example_input1, example_input1),
  "model.onnx",
  # only needed if you want to specify an opset version > 1.
  custom_opsets={"custom_domain": 2})

You can export it as one or a combination of standard ONNX ops, or as a custom operator. The example above exports it as a custom operator in the "custom_domain" opset. When exporting a custom operator, you can specify the custom domain version using the custom_opsets dictionary at export. If not specified, the custom opset version defaults to 1. The runtime that consumes the model needs to support the custom op. See Caffe2 custom ops, ONNX Runtime custom ops, or your runtime of choice's documentation.

When export fails due to an unconvertible ATen op, there may in fact be more than one such op but the error message only mentions the first. To discover all of the unconvertible ops in one go you can:

from torch.onnx import utils as onnx_utils

# prepare model, args, opset_version
...

torch_script_graph, unconvertible_ops = onnx_utils.unconvertible_ops(
    model, args, opset_version=opset_version)

print(set(unconvertible_ops))

Q: I have exported my LSTM model, but its input size seems to be fixed?

The tracer records the shapes of the example inputs. If the model should accept inputs of dynamic shapes, set dynamic_axes when calling :func:`torch.onnx.export`.

Q: How to export models containing loops?

See Tracing vs Scripting.

Q: How to export models with primitive type inputs (e.g. int, float)?

Support for primitive numeric type inputs was added in PyTorch 1.9. However, the exporter does not support models with str inputs.

Q: Does ONNX support implicit scalar datatype casting?

No, but the exporter will try to handle that part. Scalars are exported as constant tensors. The exporter will try to figure out the right datatype for scalars. However when it is unable to do so, you will need to manually specify the datatype. This often happens with scripted models, where the datatypes are not recorded. For example:

class ImplicitCastType(torch.jit.ScriptModule):
    @torch.jit.script_method
    def forward(self, x):
        # Exporter knows x is float32, will export "2" as float32 as well.
        y = x + 2
        # Currently the exporter doesn't know the datatype of y, so
        # "3" is exported as int64, which is wrong!
        return y + 3
        # To fix, replace the line above with:
        # return y + torch.tensor([3], dtype=torch.float32)

x = torch.tensor([1.0], dtype=torch.float32)
torch.onnx.export(ImplicitCastType(), x, "implicit_cast.onnx",
                  example_outputs=ImplicitCastType()(x))

We are trying to improve the datatype propagation in the exporter such that implicit casting is supported in more cases.

Q: Are lists of Tensors exportable to ONNX?

Yes, for opset_version >= 11, since ONNX introduced the Sequence type in opset 11.
.. autofunction:: export
.. autofunction:: export_to_pretty_string
.. autofunction:: register_custom_op_symbolic
.. autofunction:: select_model_mode_for_export
.. autofunction:: is_in_onnx_export