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get error sometimes after collapsing annotations and try to redo layout #54

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risserlin opened this issue May 25, 2016 · 1 comment
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@risserlin
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Annotate network
collapse annotations
re-apply default layout
image

java.lang.NullPointerException
java.lang.NullPointerException
java.lang.NullPointerException
java.lang.NullPointerException
java.lang.NullPointerException
java.lang.NullPointerException
java.lang.NullPointerException
java.lang.IllegalArgumentException: unrecognized (table entry): Node suid: 1556
(table name): USER
at org.cytoscape.model.internal.DefaultTablesNetwork.getRow(DefaultTable
sNetwork.java:118)
at org.cytoscape.model.internal.CySubNetworkImpl.getRow(CySubNetworkImpl
.java:62)
at org.cytoscape.model.internal.DefaultTablesNetwork.getRow(DefaultTable
sNetwork.java:95)
at org.cytoscape.model.internal.CySubNetworkImpl.getRow(CySubNetworkImpl
.java:62)
at org.cytoscape.view.layout.LayoutPartition.addNode(LayoutPartition.jav
a:154)
at org.cytoscape.view.layout.PartitionUtil.traverse(PartitionUtil.java:1
74)
at org.cytoscape.view.layout.PartitionUtil.partition(PartitionUtil.java:
130)
at org.cytoscape.view.layout.AbstractPartitionLayoutTask.doLayout(Abstra
ctPartitionLayoutTask.java:178)
at org.cytoscape.view.layout.AbstractLayoutTask.run(AbstractLayoutTask.j
ava:156)
at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.inne
rRun(JDialogTaskManager.java:342)
at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.run(
JDialogTaskManager.java:355)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:51
1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.
java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor
.java:617)
at java.lang.Thread.run(Thread.java:745)

@risserlin risserlin added the bug label May 25, 2016
@mikekucera mikekucera added this to the v1.1.0 milestone May 26, 2016
@mikekucera mikekucera self-assigned this May 26, 2016
@mikekucera
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Can't reproduce this.

@mikekucera mikekucera modified the milestones: v1.1.0, v1.2.0 Jan 23, 2017
@mikekucera mikekucera removed this from the v1.2.0 milestone Jul 20, 2017
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