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/rfove not found on Galaxy EU, but working in CI and locally #95

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kostrykin opened this issue Nov 15, 2023 · 0 comments
Closed

/rfove not found on Galaxy EU, but working in CI and locally #95

kostrykin opened this issue Nov 15, 2023 · 0 comments
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@kostrykin
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kostrykin commented Nov 15, 2023

The rfove tool fails to run on Galaxy EU:

/data/jwd02f/main/064/693/64693286/tool_script.sh: line 9: /rfove: No such file or directory

History: https://usegalaxy.eu/u/e26918e6b1264c81874871c01e988195/h/rfove-test

But both, testing locally with planemo test --docker and in CI works:

Sources: https://github.com/BMCV/galaxy-image-analysis/blob/master/tools/rfove/rfove.xml#L19

Might there be an issue with the Docker container? I'm not very experienced with Docker containers in Galaxy:

    <requirements> 
        <container type="docker">docker.io/kostrykin/rfove:@TOOL_VERSION@</container>
    </requirements>

Dockerfile: https://github.com/kostrykin/rfove/blob/master/Dockerfile

xref #89 #91 usegalaxy-eu/usegalaxy-eu-tools#645

@kostrykin kostrykin self-assigned this Nov 15, 2023
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