diff --git a/tools/color_deconvolution/.shed.yml b/tools/color_deconvolution/.shed.yml index 05dbe697..38e59e2d 100644 --- a/tools/color_deconvolution/.shed.yml +++ b/tools/color_deconvolution/.shed.yml @@ -5,4 +5,4 @@ long_description: This tools does color space transformation using preset transf name: color_deconvolution owner: imgteam homepage_url: https://github.com/bmcv -remote_repository_url: https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/color-deconvolution/ +remote_repository_url: https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/color_deconvolution/ diff --git a/tools/color_deconvolution/color-deconvolution.xml b/tools/color_deconvolution/color_deconvolution.xml similarity index 69% rename from tools/color_deconvolution/color-deconvolution.xml rename to tools/color_deconvolution/color_deconvolution.xml index a420542e..e16f2ebd 100644 --- a/tools/color_deconvolution/color-deconvolution.xml +++ b/tools/color_deconvolution/color_deconvolution.xml @@ -1,5 +1,14 @@ - + + + creators.xml + tests.xml + 0.8 + 2 + + + + operation_3443 @@ -7,11 +16,11 @@ galaxy_image_analysis - scikit-image - pillow - scikit-learn - numpy - tifffile + scikit-image + pillow + scikit-learn + numpy + tifffile - + - **What it does** - This tools performs several color deconvolution techniques. + **What it does** + + This tools performs several color deconvolution techniques. + + 10.7717/peerj.453 @inproceedings{sklearn_api, - author = {Lars Buitinck and Gilles Louppe and Mathieu Blondel and - Fabian Pedregosa and Andreas Mueller and Olivier Grisel and - Vlad Niculae and Peter Prettenhofer and Alexandre Gramfort - and Jaques Grobler and Robert Layton and Jake VanderPlas and - Arnaud Joly and Brian Holt and Ga{\"{e}}l Varoquaux}, - title = {{API} design for machine learning software: experiences from the scikit-learn - project}, - booktitle = {ECML PKDD Workshop: Languages for Data Mining and Machine Learning}, - year = {2013}, - pages = {108--122}, -} + author = {Lars Buitinck and Gilles Louppe and Mathieu Blondel and + Fabian Pedregosa and Andreas Mueller and Olivier Grisel and + Vlad Niculae and Peter Prettenhofer and Alexandre Gramfort + and Jaques Grobler and Robert Layton and Jake VanderPlas and + Arnaud Joly and Brian Holt and Ga{\"{e}}l Varoquaux}, + title = {{API} design for machine learning software: experiences from the scikit-learn project}, + booktitle = {ECML PKDD Workshop: Languages for Data Mining and Machine Learning}, + year = {2013}, + pages = {108--122}, + } diff --git a/tools/color_deconvolution/creators.xml b/tools/color_deconvolution/creators.xml new file mode 120000 index 00000000..5d2b71e0 --- /dev/null +++ b/tools/color_deconvolution/creators.xml @@ -0,0 +1 @@ +../../macros/creators.xml \ No newline at end of file diff --git a/tools/color_deconvolution/test-data/galaxyIcon_noText.tiff b/tools/color_deconvolution/test-data/galaxyIcon_noText.tiff new file mode 100644 index 00000000..f6bff729 Binary files /dev/null and b/tools/color_deconvolution/test-data/galaxyIcon_noText.tiff differ diff --git a/tools/color_deconvolution/tests.xml b/tools/color_deconvolution/tests.xml new file mode 120000 index 00000000..e20d710a --- /dev/null +++ b/tools/color_deconvolution/tests.xml @@ -0,0 +1 @@ +../../macros/tests.xml \ No newline at end of file