DESCRIPTION

Package: netSmooth
Type: Package
Title: Network smoothing for scRNAseq
Version: 1.7.0
Authors@R: c(person("Jonathan", "Ronen", role = c("aut", "cre"),
                     email = "yablee@gmail.com"),
              person("Altuna", "Akalin", role = c("aut")))
Description: netSmooth is an R package for network smoothing of single cell RNA
    sequencing data. Using bio networks such as protein-protein interactions as
    priors for gene co-expression, netsmooth improves cell type identification
    from noisy, sparse scRNAseq data.
biocViews: Network, GraphAndNetwork, SingleCell, RNASeq, GeneExpression,
    Sequencing, Transcriptomics, Normalization, Preprocessing, Clustering,
    DimensionReduction
URL: https://github.com/BIMSBbioinfo/netSmooth
BugReports: https://github.com/BIMSBbioinfo/netSmooth/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 3.5),
    scater (>= 1.15.11),
    clusterExperiment (>= 2.1.6)
Imports:
    entropy,
    SummarizedExperiment,
    SingleCellExperiment,
    Matrix,
    cluster,
    data.table,
    stats,
    methods,
    DelayedArray,
    HDF5Array
Suggests: knitr,
    testthat,
    Rtsne,
    biomaRt,
    igraph,
    STRINGdb,
    NMI,
    pheatmap,
    ggplot2,
    BiocStyle, 
    rmarkdown,
    BiocParallel,
    uwot
VignetteBuilder: knitr
RoxygenNote: 7.0.2