Collection of perl scripts parsing different ngs-related file formats
extract_BaseCovInformation.pl
Extracts nucleotide-wise coverage from a bam alignment file using samtools mpileup as input.
Was used within the publication entitled "Targeted introduction of heritable point mutations into the plant mitochondrial genome".
PMID: 35301443
DOI: 10.1038/s41477-022-01108-y