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Reproducibility files

The current repository contains data and scripts needed to reproduce all figures in the paper Visualization methods for differential expression analysis.

Note about citation

If you use these figure-regeneration tools, please kindly cite the current paper:

@article{rutter2019visualization,
  title={Visualization methods for differential expression analysis},
  author={Rutter, Lindsay and Lauter, Adrienne N Moran and Graham, Michelle A and Cook, Dianne},
  journal={BMC bioinformatics},
  volume={20},
  number={1},
  pages={1--31},
  year={2019},
  publisher={Springer}
}

Or, please cite our Bioconductor package bigPint which hosts these figure-generation tools:

@Article{rutter2020bigpint,
  title="bigPint: A Bioconductor visualization package that makes big data pint-sized",
  author="Rutter, Lindsay and Cook, Dianne",
  journal="PLOS Computational Biology",
  volume="16",
  number="6",
  pages="e1007912",
  year="2020",
  publisher="Public Library of Science",
  doi="10.1371/journal.pcbi.1007912",
  url="https://doi.org/10.1371/journal.pcbi.1007912"
}