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VIBRANT error ouputfile #97

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Xuyang-Feng opened this issue Jul 17, 2024 · 1 comment
Open

VIBRANT error ouputfile #97

Xuyang-Feng opened this issue Jul 17, 2024 · 1 comment

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@Xuyang-Feng
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Hi,

when I used vibrant for viral-contig identification, I found that the output files' name is not the same as the README.DOC described. Here are the names of my output: (5000_VOTU_four-orf-count.txt, 5000_VOTU.parallel-runs_aa.faa, 5000_VOTU.parallel-runs_aa.fna, 5000_VOTU.parallel-runs_aa.temp, 5000_VOTU.parallel-runs.txt, VIBRANT_log_5000_VOTU.log).

This is the work.sh I used to run vibrant:
conda activate bioenv3.9
python VIBRANT_run.py -i $path/Pre_test/5000_VOTU.fa

When I ran the work.sh, there were no error being reported, but the output file was totally different from the README.DOC. I want to know how I could solve this problem.

Thank you very much.

@KrisKieft
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What your seeing are intermediate files and your run likely had an error but unfortunately didn't report anything. I highly suggest installing from GitHub instead of conda to see if that solves the issue. A simialr thing has been reported before.

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