HELP!!!

[Peng2555]

When I was running run. py for VIBRANT, I encountered ImportError: cannot import name 'DtypeObj'. How should this problem be solved? And using pip to download 'DtypeObj' did not find the corresponding import. Help

[KrisKieft]

VIBRANT does not have any import called 'DtypeObj'. Can you please send the full error message?

[Peng2555]

This is all the error messages: Traceback (most recent call last):
File "./VIBRANT_run.py", line 23, in
import pandas as pd
File "/home/data/pp2/.conda/envs/VIBRANT/lib/python3.6/site-packages/pandas/init.py", line 55, in
from pandas.core.api import (
File "/home/data/pp2/.conda/envs/VIBRANT/lib/python3.6/site-packages/pandas/core/api.py", line 5, in
from pandas.core.arrays.integer import (
File "/home/data/pp2/.conda/envs/VIBRANT/lib/python3.6/site-packages/pandas/core/arrays/init.py", line 13, in
from .sparse import SparseArray # noqa: F401
File "/home/data/pp2/.conda/envs/VIBRANT/lib/python3.6/site-packages/pandas/core/arrays/sparse/init.py", line 3, in
from pandas.core.arrays.sparse.accessor import SparseAccessor, SparseFrameAccessor
File "/home/data/pp2/.conda/envs/VIBRANT/lib/python3.6/site-packages/pandas/core/arrays/sparse/accessor.py", line 10, in
from pandas.core.arrays.sparse.array import SparseArray
File "/home/data/pp2/.conda/envs/VIBRANT/lib/python3.6/site-packages/pandas/core/arrays/sparse/array.py", line 44, in
from pandas.core.arrays.sparse.dtype import SparseDtype
File "/home/data/pp2/.conda/envs/VIBRANT/lib/python3.6/site-packages/pandas/core/arrays/sparse/dtype.py", line 9, in
from pandas._typing import Dtype, DtypeObj
ImportError: cannot import name 'DtypeObj'

[Peng2555]

Like this:VIBRANT Error: Please install VIBRANT dependancy module(s). See below for the encountered error:

cannot import name 'DtypeObj'

[KrisKieft]

The import error comes from pandas. What version of pandas do you have?

[Peng2555]

pandas==1.1.5

[KrisKieft]

Try updating pandas