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No phages detected in bacterial genome sequence #88

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adijatj opened this issue Jan 7, 2024 · 1 comment
Open

No phages detected in bacterial genome sequence #88

adijatj opened this issue Jan 7, 2024 · 1 comment

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@adijatj
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adijatj commented Jan 7, 2024 •
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Hi,

I ran VIBRANT (version 1.2.1) on two bacterial genome sequences known to have phages as predicted with Virsorter2 and other tools, but the output from VIBRANT shows no phages. How do I troubleshoot or resolve this, please? There is a caution warning that says running a version of scikit-learn lower than v0.21.3 will likely cause issues but the version I have is 1.0.2
@KrisKieft
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I think the error message is worded incorrectly. Are you able to install v0.21.3?

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@KrisKieft @adijatj