When running metabolic-c, I get the following error:

[HAIS-st]

When running metabolic-c, I get the following error:
rm: cannot remove '/home/result/SCS_003_5/metabolic/.bt2': No such file or directory
rm: cannot remove '/home/result/SCS_003_5/metabolic/.bt2': No such file or directory
rm: cannot remove '/home/result/SCS_003_5/metabolic/.bam': No such file or directory
rm: cannot remove '/home/result/SCS_003_5/metabolic/.bam': No such file or directory
rm: cannot remove '/home/result/SCS_003_5/metabolic/.bai': No such file or directory
rm: cannot remove '/home/result/SCS_003_5/metabolic/.bai': No such file or directory
Here's my script:
perl /opt/software/METABOLIC/METABOLIC-C.pl -in-gn /home/result/${file_name}/assembly -r /home/result/${file_name}/pair.txt -o /home/result/${file_name}/metabolic -t 10

[HAIS-st]

@patriciatran

[patriciatran]

From reading these errors, it seems like a read mapping error. Can you provide examples (a few lines) of the way you formatted your pair.txt files please?

[HAIS-st]

Of course, here is my file
pair.txt