From 76f06b933f891e02936e80f473ac36f39db9be3c Mon Sep 17 00:00:00 2001 From: Thijs Heus <6053388+thijsheus@users.noreply.github.com> Date: Thu, 16 May 2024 17:11:29 -0400 Subject: [PATCH 1/3] First iteration of analyze notebook --- tutorials/microhh/analyze_microhh.ipynb | 13357 ++++++++++++++++++++++ 1 file changed, 13357 insertions(+) create mode 100644 tutorials/microhh/analyze_microhh.ipynb diff --git a/tutorials/microhh/analyze_microhh.ipynb b/tutorials/microhh/analyze_microhh.ipynb new file mode 100644 index 0000000..3a557d5 --- /dev/null +++ b/tutorials/microhh/analyze_microhh.ipynb @@ -0,0 +1,13357 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [], + "source": [ + "#Load the usual libraries\n", + "import matplotlib.pyplot as plt\n", + "import xarray as xr\n", + "import scipy as sp\n", + "import numpy as np\n", + "import netCDF4 as nc" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": {}, + "outputs": [], + "source": [ + "# locate the folder where the data is stored\n", + "basedir = '/data/lasso/SGP/SGP_20160611/'\n", + "basename = 'SGP'\n", + "NC_arr = [10, 50, 80, 100, 200, 400, 800]\n" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "metadata": {}, + "outputs": [], + "source": [ + "# Load a specific data set, and cycling through all groups to load all data\n", + "def load_data(fname):\n", + " groups = [''] + list(nc.Dataset(fname).groups.keys())\n", + " prof_dict = {}\n", + " for group in groups:\n", + " try:\n", + " prof_dict[group] = xr.open_dataset(fname, group=group, decode_times=True)\n", + " \n", + " except KeyError:\n", + " print(f'Group {group} not found in {fname}')\n", + " except IOError:\n", + " print(f'File {fname} not found')\n", + " except:\n", + " print('Unexpected error')\n", + " prof = xr.merge(prof_dict.values())\n", + " prof = prof.where(prof.apply(np.fabs)<1e10)\n", + "\n", + " return prof\n", + "\n", + "# Cycle through all conditional samples and load the data; the conditional sample is added as a new dimension\n", + "def load_cond_data(dir, basename, cond_samps):\n", + " prof_dict = {}\n", + " for cond_samp in cond_samps:\n", + " fname = dir + '/' + basename +'.' + cond_samp + '.0000000.nc'\n", + " prof_dict[cond_samp] = load_data(fname).expand_dims(dim={'sample': [cond_samp]})\n", + " prof = xr.merge(prof_dict.values())\n", + " return prof\n", + " \n", + "# Cycle through all different Number concentrations and load the data; the number concentration is added as a new dimension\n", + "def load_all_data(basedir, fname, NCs, cond_samps = ['default']):\n", + " prof_array = {}\n", + " for NC in NCs:\n", + " NCstr = f'NC{NC:03}'\n", + " print('Loading data for ' + NCstr)\n", + " dir = basedir + '/' + NCstr + '/'\n", + " prof_array[NCstr] = load_cond_data(dir, basename, cond_samps).expand_dims(dim={'NC': [NC]})\n", + "\n", + " return xr.merge(prof_array.values())\n", + "\n" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Loading data for NC010\n", + "Loading data for NC050\n", + "Loading data for NC080\n", + "Loading data for NC100\n", + "Loading data for NC200\n", + "Loading data for NC400\n", + "Loading data for NC800\n" + ] + } + ], + "source": [ + "# Load the data for all number concentrations and conditional samples\n", + "cond_samps = ['default', 'ql', 'qlcore']\n", + "prof = load_all_data(basedir, basename, NC_arr, cond_samps)\n", + "\n", + "#Slice the data for our area of interest, and resample to 30 min intervals\n", + "prof = prof.sel(time=slice(\"2016-06-11T12\", \"2016-06-12T02\"),z=slice(0,4000), zh=slice(0,4000)).resample(time='0.5H').mean(dim='time')\n" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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array([[[[ 0., 0., 0., ..., 0., 0., 0.],\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + " [nan, nan, nan, ..., nan, nan, nan]],\n", + "\n", + " [[ 0., 0., 0., ..., 0., 0., 0.],\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + " [nan, nan, nan, ..., nan, nan, nan]],\n", + "\n", + " [[ 0., 0., 0., ..., 0., 0., 0.],\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + " [nan, nan, nan, ..., nan, nan, nan]],\n", + "\n", + " ...,\n", + "\n", + " [[ 0., 0., 0., ..., 0., 0., 0.],\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + " [nan, nan, nan, ..., nan, nan, nan]],\n", + "\n", + " [[ 0., 0., 0., ..., 0., 0., 0.],\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + "...\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + " [nan, nan, nan, ..., nan, nan, nan]],\n", + "\n", + " [[ 0., 0., 0., ..., 0., 0., 0.],\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + " [nan, nan, nan, ..., nan, nan, nan]],\n", + "\n", + " ...,\n", + "\n", + " [[ 0., 0., 0., ..., 0., 0., 0.],\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + " [nan, nan, nan, ..., nan, nan, nan]],\n", + "\n", + " [[ 0., 0., 0., ..., 0., 0., 0.],\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + " [nan, nan, nan, ..., nan, nan, nan]],\n", + "\n", + " [[ 0., 0., 0., ..., 0., 0., 0.],\n", + " [nan, nan, nan, ..., nan, nan, nan],\n", + " [nan, nan, nan, ..., nan, nan, nan]]]], dtype=float32)
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