diff --git a/miracum_pipe.sh b/miracum_pipe.sh index c0da663..518188f 100755 --- a/miracum_pipe.sh +++ b/miracum_pipe.sh @@ -15,7 +15,7 @@ function usage() { } PARAM_DOCKER_REPO_NAME="agboerries/miracum_pipe" -readonly VALID_PROTOCOLS=("wes panel") +readonly VALID_PROTOCOLS=("wes panel tumorOnly") while getopts t:p:d:v:n:fsrh option; do case "${option}" in