diff --git a/README.md b/README.md index 5127401..caf7d62 100644 --- a/README.md +++ b/README.md @@ -17,7 +17,7 @@ Prior running the setup script, some components need to be installed manually: - databases - [hallmark gene-sets](http://software.broadinstitute.org/gsea/msigdb/) - - h.all.v7.0.entrez.gmt + - h.all.vX.X.entrez.gmt (current release is v7.1 (June 2020)) - [condel score](https://bbglab.irbbarcelona.org/fannsdb/) - fannsdb.tsv.gz - fannsdb.tsv.gz.tbi @@ -51,7 +51,7 @@ See `setup.sh -h` to list the available options. By default, we do not install t - create a database for the latest COSMIC release (according to the [annovar manual](http://annovar.openbioinformatics.org/en/latest/user-guide/filter/#cosmic-annotations)) - Download [prepare_annovar_user.pl](http://www.openbioinformatics.org/annovar/download/prepare_annovar_user.pl) and add to annovar folder - register at [COSMIC](https://cancer.sanger.ac.uk/cosmic); - - Download the latest release for GRCh37 (as of October 2019 the latest release is v90): + - Download the latest release for GRCh37 (as of June 2020 the latest release is v91): - VCF/CosmicCodingMuts.vcf.gz - VCF/CosmicNonCodingVariants.vcf.gz - CosmicMutantExport.tsv.gz