From 3dec4fbb9d59b23ede8cb911e64eed0f3b7f3877 Mon Sep 17 00:00:00 2001
From: Patrick Metzger <patrick.metzger@uniklinik-freiburg.de>
Date: Tue, 29 Sep 2020 14:21:07 +0200
Subject: [PATCH] added latest annovar annotation files / updated current
 annotation dbs

---
 setup.sh | 7 ++-----
 1 file changed, 2 insertions(+), 5 deletions(-)

diff --git a/setup.sh b/setup.sh
index 8e982e9..269fbf2 100755
--- a/setup.sh
+++ b/setup.sh
@@ -175,12 +175,9 @@ function setup_tool_annovar() {
   ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar dbnsfp35a humandb/
   # only take gnomAD_genome
   ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar gnomad211_genome humandb/ # version 2.1.1
-  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar gnomad_exome humandb/
-  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar exac03 humandb/
-  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar esp6500siv2_ea humandb/
-  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar 1000g2015aug humandb/
   ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar avsnp150 humandb/
-  ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar clinvar_20180603 humandb/
+  #./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar clinvar_20180603 humandb/
+  ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar clinvar_20200316 humandb/
   ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar intervar_20180118 humandb/
 
   echo "done"