Adding and removing instances yields errors

[jeroenrook]

Steps to reproduce:
mkdir tempexp; cd tempexp' sparkle initialise sparkle add_instances ../Sparkle/Examples/Resources/Instances/PTN`

yields
"""
Start adding all instances in directory ../Sparkle/Examples/Resources/Instances/PTN ...
Copying files...
Copying ../Sparkle/Examples/Resources/Instances/PTN/Ptn-7824-b15.cnf to Instances/PTN...
Copying done!
Traceback (most recent call last):
File "/home/rook/.miniforge3/envs/sparkle/lib/python3.10/site-packages/sparkle/CLI/add_instances.py", line 96, in
performance_data.add_instance(str(instance_path))
File "/home/rook/.miniforge3/envs/sparkle/lib/python3.10/site-packages/sparkle/structures/performance_dataframe.py", line 253, in add_instance
emidx = pd.MultiIndex(levels, names=PerformanceDataFrame.multi_dim_names)
File "/home/rook/.miniforge3/envs/sparkle/lib/python3.10/site-packages/pandas/core/indexes/multi.py", line 340, in new
raise TypeError("Must pass both levels and codes")
TypeError: Must pass both levels and codes
"""

sparkle remove instances PTN
yields
"""
Start removing all instances in directory Instances/PTN ...
Traceback (most recent call last):
File "/home/rook/.miniforge3/envs/sparkle/lib/python3.10/site-packages/sparkle/CLI/remove_instances.py", line 53, in
feature_data.remove_instances(str(instance))
File "/home/rook/.miniforge3/envs/sparkle/lib/python3.10/site-packages/sparkle/structures/feature_dataframe.py", line 85, in remove_instances
self.dataframe.drop(instances, axis=1, inplace=True)
File "/home/rook/.miniforge3/envs/sparkle/lib/python3.10/site-packages/pandas/core/frame.py", line 5581, in drop
return super().drop(
File "/home/rook/.miniforge3/envs/sparkle/lib/python3.10/site-packages/pandas/core/generic.py", line 4788, in drop
obj = obj._drop_axis(labels, axis, level=level, errors=errors)
File "/home/rook/.miniforge3/envs/sparkle/lib/python3.10/site-packages/pandas/core/generic.py", line 4830, in _drop_axis
new_axis = axis.drop(labels, errors=errors)
File "/home/rook/.miniforge3/envs/sparkle/lib/python3.10/site-packages/pandas/core/indexes/base.py", line 7070, in drop
raise KeyError(f"{labels[mask].tolist()} not found in axis")
KeyError: "['Instances/PTN/Ptn-7824-b03.cnf'] not found in axis"
"""

[jeroenrook]

conda list

packages in environment at /home/rook/.miniforge3/envs/sparkle:

 Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
bzip2                     1.0.8                h4bc722e_7    conda-forge
ca-certificates           2024.8.30            hbcca054_0    conda-forge
click                     8.1.7                    pypi_0    pypi
cloudpickle               3.0.0                    pypi_0    pypi
configspace               1.2.0                    pypi_0    pypi
dask                      2024.8.2                 pypi_0    pypi
dask-jobqueue             0.9.0                    pypi_0    pypi
distributed               2024.8.2                 pypi_0    pypi
emcee                     3.1.6                    pypi_0    pypi
filelock                  3.15.1                   pypi_0    pypi
fsspec                    2024.6.1                 pypi_0    pypi
importlib-metadata        8.4.0                    pypi_0    pypi
jinja2                    3.1.4                    pypi_0    pypi
joblib                    1.4.2                    pypi_0    pypi
kaleido                   0.2.1                    pypi_0    pypi
ld_impl_linux-64          2.40                 hf3520f5_7    conda-forge
liac-arff                 2.5.0                    pypi_0    pypi
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc                    14.1.0               h77fa898_1    conda-forge
libgcc-ng                 14.1.0               h69a702a_1    conda-forge
libgomp                   14.1.0               h77fa898_1    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libnuma                   2.0.18               h4ab18f5_2    conda-forge
libsqlite                 3.46.1               hadc24fc_0    conda-forge
libstdcxx                 14.1.0               hc0a3c3a_1    conda-forge
libstdcxx-ng              14.1.0               h4852527_1    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libxcrypt                 4.4.36               hd590300_1    conda-forge
libzlib                   1.3.1                h4ab18f5_1    conda-forge
locket                    1.0.0                    pypi_0    pypi
markupsafe                2.1.5                    pypi_0    pypi
more-itertools            10.4.0                   pypi_0    pypi
msgpack                   1.0.8                    pypi_0    pypi
ncurses                   6.5                  he02047a_1    conda-forge
numactl                   2.0.18               h4ab18f5_2    conda-forge
numpy                     1.26.4                   pypi_0    pypi
openssl                   3.3.2                hb9d3cd8_0    conda-forge
packaging                 24.1                     pypi_0    pypi
pandas                    2.2.2                    pypi_0    pypi
partd                     1.4.2                    pypi_0    pypi
pcre                      8.45                 h9c3ff4c_0    conda-forge
pip                       24.2               pyh8b19718_1    conda-forge
plotly                    5.23.0                   pypi_0    pypi
psutil                    6.0.0                    pypi_0    pypi
pydantic                  1.10.18                  pypi_0    pypi
pynisher                  1.0.10                   pypi_0    pypi
pyparsing                 3.1.4                    pypi_0    pypi
pyrfr                     0.9.0                    pypi_0    pypi
python                    3.10.14         hd12c33a_0_cpython    conda-forge
python-dateutil           2.9.0.post0              pypi_0    pypi
pytz                      2024.1                   pypi_0    pypi
pyyaml                    6.0.2                    pypi_0    pypi
readline                  8.2                  h8228510_1    conda-forge
regex                     2024.7.24                pypi_0    pypi
runrunner                 0.1.6.4                  pypi_0    pypi
scikit-learn              1.3.2                    pypi_0    pypi
scipy                     1.14.1                   pypi_0    pypi
setuptools                73.0.1             pyhd8ed1ab_0    conda-forge
six                       1.16.0                   pypi_0    pypi
smac                      2.2.0                    pypi_0    pypi
sortedcontainers          2.4.0                    pypi_0    pypi
sparkleai                 0.8.5                    pypi_0    pypi
swig                      4.0.2                hd3c618e_2    conda-forge
tabulate                  0.9.0                    pypi_0    pypi
tblib                     3.0.0                    pypi_0    pypi
tenacity                  9.0.0                    pypi_0    pypi
threadpoolctl             3.5.0                    pypi_0    pypi
tk                        8.6.13          noxft_h4845f30_101    conda-forge
toolz                     0.12.1                   pypi_0    pypi
tornado                   6.4.1                    pypi_0    pypi
typing-extensions         4.12.2                   pypi_0    pypi
tzdata                    2024.1                   pypi_0    pypi
urllib3                   2.2.2                    pypi_0    pypi
wheel                     0.44.0             pyhd8ed1ab_0    conda-forge
xgboost                   2.0.3                    pypi_0    pypi
xz                        5.2.6                h166bdaf_0    conda-forge
zict                      3.0.0                    pypi_0    pypi
zipp                      3.20.1                   pypi_0    pypi

[jeroenrook]

sparkle installed with: conda env create -f environment.yml on Kathleen